Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2837 ATGGAGAAAGCATTTGATACTCTTGATTCTGTTGGTCCTGGTGTTCGGGCATGGCGATTCAAGGTTCGAATTCTTCGTTTGTGGAATGTGTATTCTTTCGCAAAACCTAATCAACTTAATTCAATTGAGATGGTACTTATTGATGAAAAGGGTTACAAGATTCATGCAACTGTTCCTCCCCATTTGTTGAATTTGTTTCGTTTCAAACTCAATGAAGGTGATGTCTATAGGTTGTTTTATTTCAAAGTACATAAGGTATCTGGTGTTTACCGTACAACTCGACACCCCTATAAACTTAGCTTCCATAAAAAAACAAAGGTTCAAAGCTGTGAAAATAATGATATAGATCGATTTGGATTGTCACTAAGTACTATTCGAGACATATGCAATCGTACTTCTGGTCATGATTTCTTAGTTGATGTTGTTGGTTTGATCACTGGTATTTCTCCTCCTAAGGAATATGTTTTTTGTGGAAAGATTACTCCCATGATTGTGTTTGAGATGGCTGATTATAGTGGAAAGTGTGATTGCATTCTGTCTGGTGATGATGTTGGTGATCTTGACAAGATGCTTAGCTGTGGTGATAATGGATTACCTCTTATGATAGTTCAGTTTGCGAAAATTAGAAATTTTAGAGGAAATATTGCTATTCAAGGTGTGTTGAGCACAAGGTTTTATGTTAATCCTTCAATACCAGAAGCTATTTCTTTCAAGAATGGTCTTCCTGTTGAAGGTGTTGAATCATTGTCTTCCATTCCTGCTTTTGGGTTTCAACCTAGGCCAGCTTTTGAGGATGATTTTTTGGTTAATTATTCCAAAATTTCCATAGTTAATTTACTTGAAAGTGTTGAAAATGGTATTTATGTTGTTAGGGCTACTGTTGATGGATTGGTCGAGGGTGAGGATTGGTGGTATCCCGGATGTAGTTGTGCTAGAATAGTTTCTGCTGACTCTGGTGCATTTTATTGCAAGCCATGCACAAAACGTCCTTTTGAAATGGTTCCAAGGTTTATGGTAAAGCTCAAGGTTTATGATGGATCTGGCCAAGCTATTTTCATTATTTTTGATGATGATATGAATAAGTTGTTGGGAAAACATTGCCATGAACTGGTTGCTTTATCCAAGGCTAAAAATGTGGGTTATTATCCTCCTGAATTAGAATTGCTTAAAGGAGTACAATTGTTGTTCAAGGTTGAGAAAAATTCTGGTGGGGATGTTCCGTTTACAGGTTCATTTAGAGTTAAGCAGATCTGCAGTGATGTTTCTGTTATGAAAGCATTTGATTCCGTTTTGGGTAGTGGTGATTCTTCTTCTTATTATGGTTTGAGTGTTAAAGAAGAGTTTGTTGAAGGTGTGCAGGTTGACTTGGTCGATAATGTTATTGTTTTACCCTCTTTTGAATTATCTAGGGAATAA 1416 0.3651 MEKAFDTLDSVGPGVRAWRFKVRILRLWNVYSFAKPNQLNSIEMVLIDEKGYKIHATVPPHLLNLFRFKLNEGDVYRLFYFKVHKVSGVYRTTRHPYKLSFHKKTKVQSCENNDIDRFGLSLSTIRDICNRTSGHDFLVDVVGLITGISPPKEYVFCGKITPMIVFEMADYSGKCDCILSGDDVGDLDKMLSCGDNGLPLMIVQFAKIRNFRGNIAIQGVLSTRFYVNPSIPEAISFKNGLPVEGVESLSSIPAFGFQPRPAFEDDFLVNYSKISIVNLLESVENGIYVVRATVDGLVEGEDWWYPGCSCARIVSADSGAFYCKPCTKRPFEMVPRFMVKLKVYDGSGQAIFIIFDDDMNKLLGKHCHELVALSKAKNVGYYPPELELLKGVQLLFKVEKNSGGDVPFTGSFRVKQICSDVSVMKAFDSVLGSGDSSSYYGLSVKEEFVEGVQVDLVDNVIVLPSFELSRE* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2837 471 CDD RPA1_DBD_C 278 398 IPR013955 -
Tpr3g2837 471 Gene3D - 264 424 IPR012340 -
Tpr3g2837 471 PANTHER REPLICATION FACTOR A 1, RFA1 22 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g2837 471 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 371 - -
Tpr3g2837 471 Pfam Replication factor-A C terminal domain 290 381 IPR013955 -
Tpr3g2837 471 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Tpr3g2837 471 Gene3D - 4 110 IPR012340 -
Tpr3g2837 471 CDD RPA1_DBD_A_like 21 107 - -
Tpr3g2837 471 SUPERFAMILY Nucleic acid-binding proteins 121 245 IPR012340 -
Tpr3g2837 471 CDD RPA1_DBD_B_like 140 238 - -
Tpr3g2837 471 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Tpr3g2837 471 Gene3D - 113 247 IPR012340 -
Tpr3g2837 471 SUPERFAMILY Nucleic acid-binding proteins 278 401 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2837 Tpr-Chr3 29567078 29569714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2837 1 398 Core DNA Replication Machinery Family AT5G08020 21.446 5.59e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2837 - - mtr:MTR_8g062030 409.838