Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2830 ATGTCACTTTCTTCTGTTTCTTCTTTTTCTTCTTTTTCTTCTATACGAGAGTTGTTTTCTCAACAATTTTCAACCAAGATTAGGGTTCTTATGATTGATCATGATATCAATCTTCTCAATTCTATTGAGAAAGTATGCAGTCAATTCTATTACACAGTCAAGACATGCTCCAATGTTTCGGATGCTTTGAATCTTTTGATGGAAAAAAAGGATAATTTTGATTTGCTACTAATTGAAGCTATAATGCCCAATGTGAATTCATATGAATTTTTGCAATATGTTAGGCAACAAATCGATATTCCTGTTATTATGATGAGTGCGGATGACTCAAGAAGTGTTGTGATGAAGGCTATTGAAGATGGAGCGTGTGATTATTGGATCAAACCTTTGACTGATAATCTAATTATGAACATGTGGCAACATGTTGCAAGAAAAATGTGGAATGAAAATAAAAACCTAAAATTTGGGGTTGAAGTCAGTCTGAAAAAAGGGGAGATATATGATTCAAAATTGCCTTTAATTGATCCAAAAATAGGAGTGATCAACACTAGTGTGGAACAAAAGAGTGTAGAAAAGAATAATGACAAACCTGAATCGTCAACAAAGACACGTGTTAAATGGACACAAGAGTTGAAGAGAAAGTTTGCTAGTGCTATAATGGAACTCAATGCCGATAAGGCACAACCCAATAAAATTCTTGCAAGGATGAATGTGCCTGGGTTGACAAGAGAGCATGTAGCTAGTCACTTACAGAAATATAGAGAGAAATTGAAGAGAGGAGATACAAAGAAACAAAAAAAACAGAACAGAACTGCAGAAACAAAAAGAGAAACCAAGATTTCAAATGGATCTTCAGAATTTGATTTTCAAGCTTATGATGCTTCTACTCCTCATGTTGTTCCCAACAATTTCATCCCAACAAATTTTCCTCATCAGCCCAACAATTTCATTCCTCCTGAAGTTAATGCAGCTCCATTTAATTTTTATCAAACTGATTCTGAGGAGGAAACTAGTTCAGCTTCTATCTACCAGCAGAATTGCAGTGGATTTGATTTTCAAGCTTATGATGCTTCTACTCCTCATGTTGTTCCCAACAGTTTCATACCCACAAATTTTCCTCACCAGCCCAACAATTTCATTCCTCCTGAAGTTAATGCAGCTCCTTTTAATTTTTATCAAACTGATTCTGAGGAAGAAACTAGTCCAGCTTCTATCTACCAGCAGAATTGCAGTGGATTTGATTTTCAAGTTTATGATGCTTCTATTATTAATCCATCTCTCGTTGATTATTATCCAAACGAGCTTGTATATTATTGA 1317 0.3478 MSLSSVSSFSSFSSIRELFSQQFSTKIRVLMIDHDINLLNSIEKVCSQFYYTVKTCSNVSDALNLLMEKKDNFDLLLIEAIMPNVNSYEFLQYVRQQIDIPVIMMSADDSRSVVMKAIEDGACDYWIKPLTDNLIMNMWQHVARKMWNENKNLKFGVEVSLKKGEIYDSKLPLIDPKIGVINTSVEQKSVEKNNDKPESSTKTRVKWTQELKRKFASAIMELNADKAQPNKILARMNVPGLTREHVASHLQKYREKLKRGDTKKQKKQNRTAETKRETKISNGSSEFDFQAYDASTPHVVPNNFIPTNFPHQPNNFIPPEVNAAPFNFYQTDSEEETSSASIYQQNCSGFDFQAYDASTPHVVPNSFIPTNFPHQPNNFIPPEVNAAPFNFYQTDSEEETSPASIYQQNCSGFDFQVYDASIINPSLVDYYPNELVYY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2830 438 Coils Coil 250 270 - -
Tpr3g2830 438 SMART REC_2 27 139 IPR001789 GO:0000160
Tpr3g2830 438 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 256 IPR006447 GO:0003677
Tpr3g2830 438 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 327 IPR045279 GO:0009736
Tpr3g2830 438 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 19 327 - -
Tpr3g2830 438 MobiDBLite consensus disorder prediction 266 282 - -
Tpr3g2830 438 Gene3D - 25 157 - -
Tpr3g2830 438 SUPERFAMILY CheY-like 26 151 IPR011006 -
Tpr3g2830 438 MobiDBLite consensus disorder prediction 254 285 - -
Tpr3g2830 438 CDD REC_typeB_ARR-like 29 143 - -
Tpr3g2830 438 ProSiteProfiles Response regulatory domain profile. 28 143 IPR001789 GO:0000160
Tpr3g2830 438 Pfam Response regulator receiver domain 29 137 IPR001789 GO:0000160
Tpr3g2830 438 Gene3D - 199 259 - -
Tpr3g2830 438 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Tpr3g2830 438 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2830 Tpr-Chr3 29521031 29522849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2830 22 259 Response Regulator Gene Family AT2G25180 36.078 2.40e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr3g2830 Response_reg 1.9e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2830 - - cam:101491966 246.514