Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2822 ATGTGGGTATCACCTGATTCTTTGTGGGTTTTTCTGGTCCACGGTTGTGTCATTCATATCGTTGATCTCGTTCCTGGCAAAGAGAGGGTTCGGATTAAGGCCAGGATTGTTCGGTTGTGGAAGGTTCCTGCTTTTCTCAATCCAAATGAATCTGGTTCTATTGAGTTGGTTCTTGTGGATTATAAGGGAGGAAAAATCCATGCTTCAGTTAGGAAGCAGTTGATTCATGTGTTTGAATCTCGTCTTGAGGAGGGTCGTGTTTACGAGTTTTCCGATTTTTCTGTTTTTCCTCAGAGTGGTAGCTATCGCACCACTTTGCATCGATACAAGATTGGTTTCCAGTTGAAGACAGTGGTTGTGGCTGCTGAAGGTGATGATATAAGTCAATTTGGAATAAAAGTTACAAGCCTTGCAGAGATTGTTGCCCGTACTGATGATTATAAGTACTTGGTTGATGTCATTGGTTTGATGACTGGTATTTCCGCTGAGAGAGAGTATGTTCGTGATGGCAAATTAACTAAAATGGTGGTTATTGAGTTGACCGATGATACCGGCAAGTGTGAGTGTGCTTTGTTTGGTGAATATGCTGATGAGTTGAGCAAAAAAATGGGGAAATCAGCGGTCAGTGGTTTGCCTATTGTGGTTGTTCAATTTGCGAAGGTCAAGATTTTCAGAGACAAAGCATCACTTCAGAATGTGCATAATACTACTAGGATTTTGATAAATCCAGAGATTGCTGAAGTTGAGGCATTTAGAAATAGCATTGCAGTTCATGGTATAGACAATGATCTTAGTCTTTCCATGATTGGTGATCGTCTTCGGCCAACTTTTGAGGAAGAGTTTATCCATAATATCTTTTATGTGACTTATTGA 873 0.4044 MWVSPDSLWVFLVHGCVIHIVDLVPGKERVRIKARIVRLWKVPAFLNPNESGSIELVLVDYKGGKIHASVRKQLIHVFESRLEEGRVYEFSDFSVFPQSGSYRTTLHRYKIGFQLKTVVVAAEGDDISQFGIKVTSLAEIVARTDDYKYLVDVIGLMTGISAEREYVRDGKLTKMVVIELTDDTGKCECALFGEYADELSKKMGKSAVSGLPIVVVQFAKVKIFRDKASLQNVHNTTRILINPEIAEVEAFRNSIAVHGIDNDLSLSMIGDRLRPTFEEEFIHNIFYVTY* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2822 290 CDD RPA1_DBD_B_like 152 252 - -
Tpr3g2822 290 Gene3D - 125 263 IPR012340 -
Tpr3g2822 290 PANTHER REPLICATION FACTOR A 1, RFA1 29 288 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g2822 290 CDD RPA1_DBD_A_like 31 119 - -
Tpr3g2822 290 Gene3D - 16 121 IPR012340 -
Tpr3g2822 290 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 29 288 - -
Tpr3g2822 290 SUPERFAMILY Nucleic acid-binding proteins 133 260 IPR012340 -
Tpr3g2822 290 Pfam Domain of unknown function DUF223 55 126 IPR003871 -
Tpr3g2822 290 SUPERFAMILY Nucleic acid-binding proteins 18 123 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2822 Tpr-Chr3 29437296 29439138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2822 17 261 Core DNA Replication Machinery Family AT2G06510 25.692 1.03e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2822 - - mtr:MTR_1g075850 280.796