Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2768 ATGGATCTTGAGACAAAGCTTACAAAAAATTACTACTTCAAACCCAACATGAAAAATCATGAGAATAATCCATTTGGTGGGGTTCCTTCATCTCAAGGAATATTACAAGATTTTAATCACATTGATAAATTTAATGTCAATGCTTCATTTTTCAATCCTATTTCCGGGGTCCAAAATTATGTACCTAGTTATAATTTTACCTATGATGTTCATCATGATTTCAAGCCTTTTGTAGAGAATAATAGTGGTAACGGTAATGCTTATGTTATGGATAATTTCCTATATGGAAACTATGGCTTGAACAATTTTTCTCAGAGGAATAATCAAGTGGAAATGATGGTTACTAATACTAACCAAAGTAATTATTTTCCCTTTAACATTTCTCAAGAAACCAAGCCTTTGAATTTTGGTGTACCTGATGAAGTTTCATGCATTTCACCACTGAATTATTACAAAAGAATTAGCTTGAACAAAAACAATAAGGGATATCTTACCTCAAGAAAGACACAAAAAGTTCGTAAGAGGTCCAACCTTGTGAAAGGGCAATGGACAGTAGAAGAAGATGGGTTGTTGATTCAACTGGTTGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTCAGATGTTGCCCGGTAGAATTGGAAAACAGTGCAGAGAGAGGTGGCATAACCATCTAAGGCCTGACATTAAGAAGGACATATGGAGTGAAGAAGAGGACAAAATATTGATCAAAGCTCATGGAGAGATAGGAAACAAATGGGCTGAGATTGCTAAAAAGTTACCTGGAAGAACAGAAAACTCAATCAAAAACCATTGGAATGCAACCAAGAGAAGACAACATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGAACACTTCTACAAGAATATATCAAGAGCTTGAACTTAGACAAAAACCCTCCAAAAGATTATAGAAGAAAATCTTCAACTAATGCTAGTGTGCTAAAAAACAAAACCAACAAAAACACAACAATATCAGCTCAGTCTCAGAATCAGAAAGCTGAACAATTTTGTTCAAGTGATCGGTGTTTGGTACCAAGTTGTGATTTTGATGATGTCCCAGATTTTTGTTTCGACGAGAATTTGTTTAAAGATGGGTGTAGTATTGATTCTTTGCTAGATGATATACAATGTGATGAAATTATGGAAGAAAAAAAACATTGTGATAATGTTGAGATAGATATGCCACTAGAGATTATGGAATCTATGCTTGGAGTTGAAGTTAAGAAGGAGATGGATTTGATTGAGATGGTTTTTTCAGATCAAAGAAATTGTTAA 1305 0.3433 MDLETKLTKNYYFKPNMKNHENNPFGGVPSSQGILQDFNHIDKFNVNASFFNPISGVQNYVPSYNFTYDVHHDFKPFVENNSGNGNAYVMDNFLYGNYGLNNFSQRNNQVEMMVTNTNQSNYFPFNISQETKPLNFGVPDEVSCISPLNYYKRISLNKNNKGYLTSRKTQKVRKRSNLVKGQWTVEEDGLLIQLVEQYGLRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKILIKAHGEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQHSKRKCRSKYPRGTLLQEYIKSLNLDKNPPKDYRRKSSTNASVLKNKTNKNTTISAQSQNQKAEQFCSSDRCLVPSCDFDDVPDFCFDENLFKDGCSIDSLLDDIQCDEIMEEKKHCDNVEIDMPLEIMESMLGVEVKKEMDLIEMVFSDQRNC* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2768 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 230 IPR017930 -
Tpr3g2768 434 ProSiteProfiles Myb-like domain profile. 227 277 IPR001005 -
Tpr3g2768 434 SUPERFAMILY Homeodomain-like 177 273 IPR009057 -
Tpr3g2768 434 CDD SANT 183 226 IPR001005 -
Tpr3g2768 434 ProSiteProfiles Myb-like domain profile. 175 226 IPR001005 -
Tpr3g2768 434 Gene3D - 234 295 - -
Tpr3g2768 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 281 IPR017930 -
Tpr3g2768 434 Pfam Myb-like DNA-binding domain 180 226 IPR001005 -
Tpr3g2768 434 Pfam Myb-like DNA-binding domain 235 274 IPR001005 -
Tpr3g2768 434 CDD SANT 235 277 IPR001005 -
Tpr3g2768 434 SMART sant 179 228 IPR001005 -
Tpr3g2768 434 SMART sant 231 279 IPR001005 -
Tpr3g2768 434 Gene3D - 179 232 - -
Tpr3g2768 434 PANTHER MYB PROTEIN-RELATED 97 382 - -
Tpr3g2768 434 PANTHER BNAC03G62830D PROTEIN 97 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2768 Tpr-Chr3 28423481 28425544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2768 46 385 MYB Transcription Factor Family AT4G18770 50.562 4.78e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g2768 Myb_DNA-binding 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2768 K09422 - gmx:102662267 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2919 5 52265373 52268039 Tpr3g2768 3 28423481 28425544 ECH
Tpr3g2768 3 28423481 28425544 Tpr3g2768 3 28423481 28425544 ECH