Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2742 ATGAGTGAGGAAGAAAATAGGATAATTAAGAAGAAAATGACTCAATGCAATGAGCTTCAAAACAATCATAGCATCACAGTGGATGGAAGAAAGGATAGCTTAATCAGAACTTGTCTCACATGTGGTCATCATATCAAATGCCAAGAACAGGGTGGTGAAATTAATGATATACCTGGATTGCCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCCAAGGTGAGGTCTGATATTCATAAGCTTCATCCTCTCATTGATGAGTTCATCCCTACTCTAGAAGGAGAGAATGGAATATGTTATACTCATCCAGAGAAATTGCCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGACCATCCAAAGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCAGATCACGAGGATGGTAGTGAAACCCGTTGGCACAAAACAGGTAAAACAAGACCAGTCTACAACAATTCCAAGTTAAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGCCAGAGAAAACAAATTGGGTGATGCATCAATATCATCTTGGAAATGATGAAGAAGAGAAAGAAGGTGTTTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAATGTGGTGGTGGTAATTCATTGATGAAAGACTCAAAAACTATGAAGGGTCAAAATGGAAATGAGGTAATGAATGGTAAAAGTAGTACTACTAATGGATCATTTGTTGAGTACTATCATTCAAATTTGATATCATTTGATCAAGGGAATCAACATAGATCTAGCAATTCTCAAGTAATAATTTCACATTTTGAAGGTGGTTCTTTCATTCCATGA 888 0.3649 MSEEENRIIKKKMTQCNELQNNHSITVDGRKDSLIRTCLTCGHHIKCQEQGGEINDIPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGNDEEEKEGVLVVSKVFYQTQPRQCGGGNSLMKDSKTMKGQNGNEVMNGKSSTTNGSFVEYYHSNLISFDQGNQHRSSNSQVIISHFEGGSFIP* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2742 295 Gene3D NAC domain 69 224 IPR036093 GO:0003677|GO:0006355
Tpr3g2742 295 MobiDBLite consensus disorder prediction 139 159 - -
Tpr3g2742 295 MobiDBLite consensus disorder prediction 134 160 - -
Tpr3g2742 295 Pfam No apical meristem (NAM) protein 61 201 IPR003441 GO:0003677|GO:0006355
Tpr3g2742 295 ProSiteProfiles NAC domain profile. 60 220 IPR003441 GO:0003677|GO:0006355
Tpr3g2742 295 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 13 289 IPR044799 GO:0003700
Tpr3g2742 295 Coils Coil 2 22 - -
Tpr3g2742 295 SUPERFAMILY NAC domain 55 220 IPR036093 GO:0003677|GO:0006355
Tpr3g2742 295 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2742 Tpr-Chr3 27925403 27929748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2742 13 237 NAC Transcription Factor Family AT4G28500 68.776 3.45e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g2742 NAM 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2742 - - gmx:100797459 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2742 3 27925403 27929748 Tpr3g2742 3 27925403 27929748 ECH