Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2733 ATGCTTGCAGTGTCACCATTGAGGAGCACCAAAGATGAAAACCAAGGAGAGATGGAGAGTTTTTCGATTACAACCGATGAATTCGGTGACCTTTCCGATGAAAATTTATTGGAAAACATTAACTTCGACGACTTCTTTGTTGGCATCAACCTCGATGGAGACATCTTGCCCGATTTGGATATGGACTCCGAGATGTTTACCGAATTCTCCGCAAGTTATGGAGAGGAATCTGATATAAACTCATCCGCTATGAATAAAACAGATGAAAAGAGTTATTCAAAAAACAAAGATAAAACAATTTATTCAGGTCGTCAAGGTTCGGAAAAGACAGTGAGCAAAAGGGATGAATATGTGGTTGTGAATCCACCTTTGCAAAAAGATGGTGGTGGGAAAGGAAGAAAATCATCAAGTCAATCTAAGAACACTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGTTAGGGGTGGATAAAGCGGTGCCTTCAAGGATTTTGGAGCTTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCATCTCCAGAAATATAGGTCACATAGAAAACATTTGCTAGCACGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTATATGGTGGTGTAGGAGGAAAAAGAGAGGTGATGAGTCCATGGCCAGCTGCTGCAGCAGCACCAATCATGGGTTTCCCTCCTACTCCTCCTATTCCCATGACTCCATTGCACCATTTTAGGCCCTTACATGTATGGGGGCATCCTTCCATCGACCAGTCTTTTATGCATATGTGGCCTAAGCCGCATCTACCACATTCCGCACCGCCGCAGCCTCTCTCATGGCCAACAGCGGCAGCTCCTCCTCCACCTCAAGACCCTTCATCTTGGCATTCTCACCACCAACTGACTCCAAACGCAATAATCCGAGGAACACATTATTTCTCACAACCTCTGACAACAGTGAGATCATTTGGATGTCAAATTCCCGGCGGCATCCCACAGCATGCTATGCACAAGCACAAAGCAGATCACGCCATTGCCGCTCCCGGTCCTGGACTCGCTCCCTTCGACTTCTATCCGTCAAAGGAGAGTTTAGACGCAGCTATTGGAGATGTTTTATCAAAACCTTGGTTGCCGCTACCACTTGGACTTAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACATAAACAAGGAGTTTCAGATATTCCACCCTAG 1263 0.4545 MLAVSPLRSTKDENQGEMESFSITTDEFGDLSDENLLENINFDDFFVGINLDGDILPDLDMDSEMFTEFSASYGEESDINSSAMNKTDEKSYSKNKDKTIYSGRQGSEKTVSKRDEYVVVNPPLQKDGGGKGRKSSSQSKNTQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGVGGKREVMSPWPAAAAAPIMGFPPTPPIPMTPLHHFRPLHVWGHPSIDQSFMHMWPKPHLPHSAPPQPLSWPTAAAPPPPQDPSSWHSHHQLTPNAIIRGTHYFSQPLTTVRSFGCQIPGGIPQHAMHKHKADHAIAAPGPGLAPFDFYPSKESLDAAIGDVLSKPWLPLPLGLKAPALDSVMGELHKQGVSDIPP* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2733 420 MobiDBLite consensus disorder prediction 1 25 - -
Tpr3g2733 420 MobiDBLite consensus disorder prediction 77 148 - -
Tpr3g2733 420 Pfam Myb-like DNA-binding domain 150 199 IPR001005 -
Tpr3g2733 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 203 IPR017930 -
Tpr3g2733 420 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 420 IPR044825 GO:0003700|GO:0045893
Tpr3g2733 420 MobiDBLite consensus disorder prediction 8 25 - -
Tpr3g2733 420 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 420 - -
Tpr3g2733 420 SUPERFAMILY Homeodomain-like 145 204 IPR009057 -
Tpr3g2733 420 Gene3D - 144 205 - -
Tpr3g2733 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 201 IPR006447 GO:0003677
Tpr3g2733 420 MobiDBLite consensus disorder prediction 89 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2733 Tpr-Chr3 27746020 27776069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2733 1 288 G2-like Transcription Factor Family AT5G44190 44.079 1.35e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr3g2733 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2733 - - jre:109001455 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2733 3 27746020 27776069 Tpr3g2733 3 27746020 27776069 ECH