Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2726 ATGGTTATGAAAACAAAGAATGTCAATCTTAAAATCAAGAAGCCTTTCAACAATAATAACAATGTAACTACAACCGAGATTCACTTCAGAGGCGTTAGAAAGAGACCATGGGGCCGTTACGCTGCCGAGATTCGCGATCCCGGCAAGAAAAGCCGTGTTTGGCTCGGCACCTTTGACACAGCCGAAGAAGCTGCTAAAGCTTACGACGCCGCCGCTCGTCAGTTCCGCGGCCCCAAAGCCAAGACCAATTTCCCTCCACCGTCTGATGTCGTTAAAGAGGATAGCCCAAGCCAGAGCAGCACCGTTGAGTCATCCACACCTGAGCGTGAAATCACTCGCCCTCGTGAAGTTGCCGCCGGCGGTGTTATGGATCGGTTCCCGTTTCTCTCGATCCAGCAACAAATCATGCCGTTTTCTGGTCTTGGTGCTGTGAATGGAATGGTAACTGCTGTGAACCCAGTTTTCTTTTTTGATCCTGCGGCTCGAGCTGAGTTTATGAACCAAAGGTTTTCTACCCGGTTTGAACCGGATCCGGTTGAGTTTAACATCGGGTTTGGTGGTGGTGTCCAGAGCGACTCGGATTCGTCTTCCGTTGTTGATTGTCAGCCGAAGAGAGCTCTCAATCTTGATCTTAACTTAGCTCCACCAATGGATGTTTAA 660 0.4939 MVMKTKNVNLKIKKPFNNNNNVTTTEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDAAARQFRGPKAKTNFPPPSDVVKEDSPSQSSTVESSTPEREITRPREVAAGGVMDRFPFLSIQQQIMPFSGLGAVNGMVTAVNPVFFFDPAARAEFMNQRFSTRFEPDPVEFNIGFGGGVQSDSDSSSVVDCQPKRALNLDLNLAPPMDV* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2726 219 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Tpr3g2726 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 208 - -
Tpr3g2726 219 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Tpr3g2726 219 MobiDBLite consensus disorder prediction 92 107 - -
Tpr3g2726 219 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Tpr3g2726 219 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Tpr3g2726 219 MobiDBLite consensus disorder prediction 77 114 - -
Tpr3g2726 219 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Tpr3g2726 219 PANTHER ERF FAMILY PROTEIN 17 208 - -
Tpr3g2726 219 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Tpr3g2726 219 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Tpr3g2726 219 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2726 Tpr-Chr3 27673149 27674249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2726 26 217 AP2-EREBP Transcription Factor Family AT5G44210 48.259 4.18e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g2726 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2726 K09286 - gmx:100801924 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2726 3 27673149 27674249 Tpr7g3503 7 43518539 43519894 ECH
Tpr3g2726 3 27673149 27674249 Tpr3g2726 3 27673149 27674249 ECH