Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2725 ATGAGTAGTGTACTTTGTGAAGAGCAACAAAAACTTCTCCTTTCCCTCAAAAAATCTCTCACTCACAGAGACACCAATATGATCGATAACATCCCACCAAGGAAGCTACTCACCCGCCGACCACCACCCACCACCGCCGACATGTCTTCCGACGAGGATCCATATTCCTCCGACCATTTCCGAATGTACGAGTTCAAAATCCGGCGATGCACTCGTAGCCGGAGCCACGACTGGACAGACTGTCCTTTCGCTCATCCAGGCGAAAAGGCCCGCCGTCGTGACCCCCTCAGATTTCAATACTCAGGTGAGGTGTGTCCTGATTACCGCCGCGGAAACTGCGAACGCGGTGATGCTTGTGAATTTTCCCACGGAGTTTTTGAGTGCTGGTTGCACCCTTCAAGGTATAGAACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGAAAAATTTGTTTTTTTGCTCATACAACCCGTCAACTCAGAGTTTTGCTATTACCACCCCCTCCTTCTCCTACACCTCAAAACAACAACAAAAATTGTTGTTCTTTTTGTCATTGTTGTTCAAATTCTTCATCTTCTTCACCCACTTCAATTTTGTTAAGTGGGCCACATTTTTCTTCTTCAAATTCACCACCTTTATCACCTTTGTCAAATTCAAAGTCCAAGGGTGTGCATGTTCTTAACGAGCTTATTCGATCTATGGAAAGTTTCAATTTTGGTGATGATATTCTTCATGAGGTTAATTCCCCTGTTTCTGCTTCGAAATTGAATTGGATTAATAATAATAATAATAATAGTCATAATTCTGTTGCTAATTCTTCATTGGGTTGTGGAAAATATTATAATTCAAGTGGTAGTGAGAACTTTTTGAAGGAAAAACAGAGCTTTAGGGTTGTTGTTGATGATGATGTTGTTGCTAACCCAGATTTTGGGTGGGTGAATGAATTGCTGATGTAG 957 0.4169 MSSVLCEEQQKLLLSLKKSLTHRDTNMIDNIPPRKLLTRRPPPTTADMSSDEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRFQYSGEVCPDYRRGNCERGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTTRQLRVLLLPPPPSPTPQNNNKNCCSFCHCCSNSSSSSPTSILLSGPHFSSSNSPPLSPLSNSKSKGVHVLNELIRSMESFNFGDDILHEVNSPVSASKLNWINNNNNNSHNSVANSSLGCGKYYNSSGSENFLKEKQSFRVVVDDDVVANPDFGWVNELLM* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2725 318 Gene3D - 97 163 - -
Tpr3g2725 318 SUPERFAMILY CCCH zinc finger 100 124 IPR036855 GO:0046872
Tpr3g2725 318 PANTHER UNKEMPT FAMILY MEMBER 40 317 IPR045234 -
Tpr3g2725 318 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Tpr3g2725 318 SMART c3hfinal6 134 157 IPR000571 GO:0046872
Tpr3g2725 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 124 IPR000571 GO:0046872
Tpr3g2725 318 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 40 317 - -
Tpr3g2725 318 MobiDBLite consensus disorder prediction 34 53 - -
Tpr3g2725 318 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2725 Tpr-Chr3 27654619 27656026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2725 55 163 C2H2 Transcription Factor Family AT5G12850 63.303 4.37e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g2725 zf-CCCH 6.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2725 K23047 - pvu:PHAVU_011G125300g 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2725 3 27654619 27656026 Tpr3g2725 3 27654619 27656026 ECH