Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2718 ATGTCGCTGCAGACTCTGAAAGAAACACTCAGACATTGCACAACCCAACAATCACAACCATCTTCTTCTTCTTCTTCATCCCAATCCATCCACGATTTCGATTCCCACTTCCCAATTCACAGAAAACCCCCAAAGTCCTCTCTTGCCCAACAGCTTCGCCTTCTTGATTACCCTGATGACCCACCCTTTCAGCCCCATAATTTCCCTTCCCAACAAAACGACTCCAAAACCCAACAACAAAACCTAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGAAGAGCCAGAGATAAAGAGGGTGAAATTCAGTTCAGCCAAATCGTCTCAGTTTCAATTCGATCATACTGGACCCTTTGAGCCTTTGGTCTTGTCTTCGGATGGAGAACTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTTGGAGTGAAGTTTCTTTATGATTTGTACAAGAACAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAGACTCCGTTCAAACTGAGAAGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAACTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGCGATTTGGTATATGATAAACTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACATTCAGGATTTATGGCAACAGTTCCTTGTCAGATATCCACTGGAATATTGTGATTATTGATGAGGCTCATCGACTTAAGAATTGGAAATCAAAACTCTACAATGCATGTTTGAAATTTAAAACCCTGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTTCAAATTGCTAATAAGAGAAAACAACACCTAGTTGGGGTTCTTAATAAATATATGTTGCGAAGGACAAAGGAAGAAACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTACAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTTATAAATAAGGACCGACCTTGTAGTTGTGGTAGCCCTCTCACACAAGCTGAATGTTGCAAAAGGACGGTACCAGATGGAGCTATTTGGCCTTATCTTCACAAAGATAACCTGGAGGATGGATGTGATTCATGCCCCTTTTGCATTGTCCTTCCATGCCTTATCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAATCCCAGAGATGACCCTGAGAAACAAGTTAAAGATGCAAAGTTTGCCGCTGCTGTCTATGGCCCAGACATTGACTTGGTTGGTGGGAGCATGCAGAATGAGAGTTTTCTGAGTCTAAGTGATACAAAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTATTGTTGTCATGGTTTTCAAATGGAAACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGTTGAACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGCCTTGGATTGAACCTGGTCAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAAGACAGGTCCTTTCGATTTGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAATTTATTCTCGCCAGGTGTACAAGCAGCAGCTATCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGCAAAGAATTTAAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAATTATTTACCAGTGAGATCATTGAAATGCATGAAACGAGTATAAAAGACGACAGGCATAAAACAGAACAACAGGAAAAAATAAATATTTCAGAAGAAACAAGTTTATTAGACACAGAGCCTGAAACCAGGTTATGTTCTGAAGCTGCGAGGACTACAACAAGTAAACCAGATATCGAATTTGAAGACCTTGGTATAGTTTACGCTCATCGCAATGAAGACGTTGTCAACTCCCGACCAGTGATTCAAGGGCAGTTATCTACCAGCGACACCCCTTCAAGTGATGACCTAAGCAGGACAAGCATCTCTGTTGTCCATCAAAAGGAAAAACCAGATTGTGTACCTAAAAAATTAAAAGTTACTTTGATTGATGAAAGAAAGAGAGCACAGTTTAGCCTCCTTGCAGATTCTATGGGCATGGGAGAGCTTGCATTCAGCAAATGGTTACTATCAGCCACTCCAGAAGAGAGAAAAAAAGTGCTTATAGACTATAAGAAGAAAAAGACTAAAGTTTGA 2664 0.4069 MSLQTLKETLRHCTTQQSQPSSSSSSSQSIHDFDSHFPIHRKPPKSSLAQQLRLLDYPDDPPFQPHNFPSQQNDSKTQQQNLEEEEEDDDDDDDEEPEIKRVKFSSAKSSQFQFDHTGPFEPLVLSSDGELPLVQVPASINCRLLEHQRVGVKFLYDLYKNNHGGILGDDMGLGKTIQTIAFLAAIFGKEGDSVQTEKRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVSIYHGANRDLVYDKLEANGVEVLITSFDTFRIYGNSSLSDIHWNIVIIDEAHRLKNWKSKLYNACLKFKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVGVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMIQLPDIQCLINKDRPCSCGSPLTQAECCKRTVPDGAIWPYLHKDNLEDGCDSCPFCIVLPCLIKLQQISNHLELIKPNPRDDPEKQVKDAKFAAAVYGPDIDLVGGSMQNESFLSLSDTKHCGKMRALEKLLLSWFSNGNKVLLFSYSVRMLNILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLSAGSLEELIYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIEMHETSIKDDRHKTEQQEKINISEETSLLDTEPETRLCSEAARTTTSKPDIEFEDLGIVYAHRNEDVVNSRPVIQGQLSTSDTPSSDDLSRTSISVVHQKEKPDCVPKKLKVTLIDERKRAQFSLLADSMGMGELAFSKWLLSATPEERKKVLIDYKKKKTKV* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2718 887 MobiDBLite consensus disorder prediction 1 104 - -
Tpr3g2718 887 Pfam SNF2-related domain 160 418 IPR000330 GO:0005524|GO:0140658
Tpr3g2718 887 PANTHER SNF2/RAD54 FAMILY MEMBER 42 824 - -
Tpr3g2718 887 CDD SF2_C_SNF 529 658 - -
Tpr3g2718 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 703 IPR027417 -
Tpr3g2718 887 SMART ultradead3 140 336 IPR014001 -
Tpr3g2718 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 378 IPR027417 -
Tpr3g2718 887 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 328 IPR014001 -
Tpr3g2718 887 MobiDBLite consensus disorder prediction 81 96 - -
Tpr3g2718 887 MobiDBLite consensus disorder prediction 1 33 - -
Tpr3g2718 887 SMART helicmild6 564 647 IPR001650 -
Tpr3g2718 887 MobiDBLite consensus disorder prediction 796 815 - -
Tpr3g2718 887 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 42 824 - -
Tpr3g2718 887 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 538 691 IPR001650 -
Tpr3g2718 887 Pfam Helicase conserved C-terminal domain 535 647 IPR001650 -
Tpr3g2718 887 Gene3D - 390 754 IPR027417 -
Tpr3g2718 887 Gene3D - 123 377 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2718 Tpr-Chr3 27559598 27566903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2718 163 688 RAD5 or RAD16-like Gene Family AT5G05130 25.201 8.51e-38 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr3g2718 SNF2_N 6.4e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2718 K20098 - gmx:100781003 1341.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2718 3 27559598 27566903 Tpr3g2718 3 27559598 27566903 ECH