Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2711 ATGGCGGAATCAGAGCACGACCACCACATCTCACCGGAACACGAGGACCACAGTCATAAGAAGAAGAAGCTTCGCAAGAGGAAAAGATCTCGTAAACAAGAAGTTGAAAAACAACAAGAGGAGGAGAACATTGAAAACGCAGAATCTGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGAAGAATCATGAACCACAACAAGGAGAAGAAGAAGAAGAAGAAAGAGACGGTGATGACGGCGAAGAAGATGAAGACAAAAAAGCGGAGACCATTGTGTCTTCTGGAATAATGAGCAAAGAGTCTTTTTCGTCTCTAGGGTTATCTCAACCTACTTCTAAGTCTATAAATGATATGGGTTTTAATCGTATGACTCAGATTCAAGCGAAAGCAATTCCGCCACTTTTGATGGGAAAGGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGTAAAACACTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACTCCTCGTAACGGAACGGGTGTTGTTGTTATTTGTCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTGAAGTATCATTCGCAAACTCTTGGATTAGTTATTGGGGGTTCTGGTAGAAAGGGAGAAGCTGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTTGCAACGCCTGGTCGTCTTCTCGATCACCTTCAGAATACAAAAGGATTCATATATAAAAACTTGAAGTGTCTCATTATTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCGGCCACACAAACAAAGAAGGTTGAGGATCTCGCCCGCTTGTCTTTTCAGACACCTCCTGTCTATGTTGATGTAGATGATGGGAGAAAAAAGGTCACAGTTGAAGGATTGGAGCAGGGCTATGTTGTTGTTCCCTGTGCCAAGCGTTTAGTTGTTCTATATTCATTCTTGAAGAGATTTCAATCCAAAAAAGTGATGGTTTTTTTCTCTTCGTGCAACTCTGTCAAATTCCATGCCGATCTCCTTAAGTTCATTGGATTAGACTGTTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGGACAACTACCTTCTTCAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGAGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAAATGGAATTTCTTCGCTATTTGAAGGCAGCAAAGATTCCTGTGAAAAACTATTTATTTGATGATAAAAAGCTTTCAAATGTACAATCTCAGCTGGAGAAGATGGTGGCCAGCATTTATCATTTGAACAGTATGGCTAAAGAGGCTTATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGGCTTGATTTACAGGCTGTTGCTACTTCATTCAGTTTTACCAACCCACCAAAGATAAATCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATTCGCAAAGTAGAAGGAAGAAGACATTGA 1695 0.4071 MAESEHDHHISPEHEDHSHKKKKLRKRKRSRKQEVEKQQEEENIENAESEEEEEEEEEEKNHEPQQGEEEEEERDGDDGEEDEDKKAETIVSSGIMSKESFSSLGLSQPTSKSINDMGFNRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAKRLVVLYSFLKRFQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEMEFLRYLKAAKIPVKNYLFDDKKLSNVQSQLEKMVASIYHLNSMAKEAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFSFTNPPKINLNIDSSASKHRKKIRKVEGRRH* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2711 564 PANTHER RNA HELICASE 60 544 - -
Tpr3g2711 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Tpr3g2711 564 Coils Coil 21 61 - -
Tpr3g2711 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Tpr3g2711 564 SMART helicmild6 359 440 IPR001650 -
Tpr3g2711 564 MobiDBLite consensus disorder prediction 93 108 - -
Tpr3g2711 564 MobiDBLite consensus disorder prediction 1 18 - -
Tpr3g2711 564 SMART ultradead3 118 323 IPR014001 -
Tpr3g2711 564 CDD DEADc_DDX18 110 307 IPR044773 GO:0003724|GO:0005524
Tpr3g2711 564 Pfam Helicase conserved C-terminal domain 334 439 IPR001650 -
Tpr3g2711 564 MobiDBLite consensus disorder prediction 43 84 - -
Tpr3g2711 564 Pfam Domain of unknown function (DUF4217) 481 541 IPR025313 -
Tpr3g2711 564 Gene3D - 77 311 IPR027417 -
Tpr3g2711 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 461 IPR027417 -
Tpr3g2711 564 Gene3D - 318 560 IPR027417 -
Tpr3g2711 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Tpr3g2711 564 MobiDBLite consensus disorder prediction 1 108 - -
Tpr3g2711 564 CDD SF2_C_DEAD 320 450 - -
Tpr3g2711 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 489 IPR001650 -
Tpr3g2711 564 SMART DUF4217_3 480 543 IPR025313 -
Tpr3g2711 564 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Tpr3g2711 564 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 60 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2711 Tpr-Chr3 27424225 27430979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2711 99 458 Eukaryotic Initiation Factors Gene Family AT3G13920 31.507 1.49e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2711 K13179 - gmx:100798290 874.004