Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2661 ATGGGAACGCGACCGCAGCAATCGTGTGTAGATGAAGAGGATGAGGAATTGTTGGGTTGTGGAACTACGATTTCCGGTCAATCAGGTTCGACGAGCAGGAGTGCCGGGTTGCCGTCTAGCCGGAGTGAGCAGACGACGGGGACAGCTGCCGGTAATAATAAATTGAATCATCTTGATATACAGGATGATGATGCTGCTTCACAGGGAGTGGTTGCTAGCAAGAGGAAGAAGAGAGGCCAACGGGCTGTTGGGGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAAGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATGGTGGTGTTATGTCCCCTGATCAGCAACAATATGATGAGAAAAACATCCGCCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACCAGTCAGAATGATATTGAAGAACTAAAGAAAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAAGCAGCGTATCTGCAGGAGCTTGAGGAACAATTTGTAGGTCTTCAGAACCTTATTCAACGAAATGAACAATTATATTGTTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGACCCGTCCTCATGCAACTGTCGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTGAAGGCAATGAATTTTGGTGAGAGTGAGAGACCACAGAGTGACAATGTTACACACAATATTGCGGATGGAGGGGAAGGTTCTAGCATGTCAGGCATGTATCAGTCACAGGTTCCTCCTTCAGTTTCAAACATGTCAATTAGGCCTCCCACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGTATTGA 1029 0.4412 MGTRPQQSCVDEEDEELLGCGTTISGQSGSTSRSAGLPSSRSEQTTGTAAGNNKLNHLDIQDDDAASQGVVASKRKKRGQRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGGVMSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSQNDIEELKKERLGLRNRIERKAAYLQELEEQFVGLQNLIQRNEQLYCSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMNFGESERPQSDNVTHNIADGGEGSSMSGMYQSQVPPSVSNMSIRPPTSPPLPGILKARVKQEY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2661 342 MobiDBLite consensus disorder prediction 21 55 - -
Tpr3g2661 342 PANTHER TRANSCRIPTION FACTOR DP 21 341 - -
Tpr3g2661 342 Pfam E2F/DP family winged-helix DNA-binding domain 90 171 IPR003316 GO:0005667|GO:0006355
Tpr3g2661 342 Pfam Transcription factor DP 179 284 IPR014889 -
Tpr3g2661 342 SUPERFAMILY "Winged helix" DNA-binding domain 90 172 IPR036390 -
Tpr3g2661 342 SMART E2F_TDP_2 87 171 IPR003316 GO:0005667|GO:0006355
Tpr3g2661 342 PANTHER TRANSCRIPTION FACTOR DP 21 341 IPR015648 GO:0005667|GO:0051726
Tpr3g2661 342 SMART DP_2 178 340 IPR014889 -
Tpr3g2661 342 CDD DP_DD 176 279 IPR014889 -
Tpr3g2661 342 MobiDBLite consensus disorder prediction 305 320 - -
Tpr3g2661 342 Gene3D Transcription factor DP 177 302 IPR038168 -
Tpr3g2661 342 MobiDBLite consensus disorder prediction 1 90 - -
Tpr3g2661 342 MobiDBLite consensus disorder prediction 305 342 - -
Tpr3g2661 342 PIRSF Txn_factor_DP 5 342 IPR015648 GO:0005667|GO:0051726
Tpr3g2661 342 Coils Coil 187 221 - -
Tpr3g2661 342 SUPERFAMILY E2F-DP heterodimerization region 178 289 IPR037241 -
Tpr3g2661 342 Gene3D - 82 176 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2661 Tpr-Chr3 26557865 26562336 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2661 77 279 E2F-DP Transcription Factor Family AT5G02470 52.941 1.09e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tpr3g2661 DP 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2661 K04683 - qsu:112000390 530.406