Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2659 ATGGGAACTCGACCGCAGCAATCGTGTGTAGATGAAGAGGATGAGGAATTGCTAGGTTGTGGAACTACGATTTCTGGACAATCTGGCTCAACAAGCAGGAGTGCTGGGTTGCCGTCTAGCCGGAGTGAGCAGACGATTGGTACATCCGCTGGTGATACTGCTGCTCTCAAAATGAACCATCTTGGTATACAGGATGATGAAGCTGGATCACAGGGTGTAGTTGCGAGCAAGAAGAAAAAGAGAGGCCAACAAAGGGCTGTGGGAGGTGATAAAAATGGAAGAGGTCTTCGTCAATTTAGTATGAAAGTTTGTGAGAAGGTAGAAAGTAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATAGTGTTTTGTCCCCTGATAAGCAACAATATGACGAAAAAAACATTCGACGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAGCTAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAATCATCCTATCTGCAGGAGCTTGAGGAACAATTTGTAGGTCTTCAGAACCTTATTCAAAGAAATGAACAGTTATTTAGCTCTGGAAATGCTCCCAGCGGAGGTGTATCCTTACCTTTTATTTTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCGTTTGAGTTGCATGACGACAATTATGTGCTCAAGGCAATGGAACTTGGTGATAGACCACAGAGTGATACTGTTACACCCAATGTTACAAATGGAGGGGAAGGTTCTAGCATGTCAGGCATGCATCAGTCACAGGTTCCTCCTTCCGCTTCAAGCGTGTCAATTAGGCCTCCAACATCACCCCCACTCCCTGGAATATTAAAGGCAAGAGTCAAGCAGGAGCATTGA 1032 0.4351 MGTRPQQSCVDEEDEELLGCGTTISGQSGSTSRSAGLPSSRSEQTIGTSAGDTAALKMNHLGIQDDEAGSQGVVASKKKKRGQQRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLSPDKQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDIEELKTERLGLRNRIERKSSYLQELEEQFVGLQNLIQRNEQLFSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMELGDRPQSDTVTPNVTNGGEGSSMSGMHQSQVPPSASSVSIRPPTSPPLPGILKARVKQEH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2659 343 SUPERFAMILY E2F-DP heterodimerization region 180 295 IPR037241 -
Tpr3g2659 343 SMART DP_2 181 341 IPR014889 -
Tpr3g2659 343 MobiDBLite consensus disorder prediction 285 343 - -
Tpr3g2659 343 MobiDBLite consensus disorder prediction 64 92 - -
Tpr3g2659 343 MobiDBLite consensus disorder prediction 20 48 - -
Tpr3g2659 343 Gene3D - 86 179 IPR036388 -
Tpr3g2659 343 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Tpr3g2659 343 MobiDBLite consensus disorder prediction 21 48 - -
Tpr3g2659 343 PIRSF Txn_factor_DP 4 343 IPR015648 GO:0005667|GO:0051726
Tpr3g2659 343 Gene3D Transcription factor DP 180 314 IPR038168 -
Tpr3g2659 343 PANTHER DP TF 25 343 - -
Tpr3g2659 343 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Tpr3g2659 343 Coils Coil 190 224 - -
Tpr3g2659 343 Coils Coil 336 343 - -
Tpr3g2659 343 SUPERFAMILY "Winged helix" DNA-binding domain 94 175 IPR036390 -
Tpr3g2659 343 MobiDBLite consensus disorder prediction 289 321 - -
Tpr3g2659 343 CDD DP_DD 179 282 IPR014889 -
Tpr3g2659 343 PANTHER TRANSCRIPTION FACTOR DP 25 343 IPR015648 GO:0005667|GO:0051726
Tpr3g2659 343 Pfam Transcription factor DP 182 312 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2659 Tpr-Chr3 26544967 26548751 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2659 65 283 E2F-DP Transcription Factor Family AT5G02470 51.364 4.82e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tpr3g2659 DP 3.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2659 K04683 - jre:108980577 531.946