Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2640 ATGACAGCTGGGAGCGTGAATTACGTTATAACGCCATTCTTGAGCAAAACCTACGATATGGTTGATGATTCTTCAACCAACACGATCCTTTCATGGGGTAAAAACGACAACTCCTTCGTCGTTTTCAGTGCCGCCGATTTCTCCAAACACATCTTACCCAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAATTGAATACCTACGGTTTTAGAAAGGTTGACCCTGATCGCTGGGAATTTGCACATGAAGGATTTTTAAGGGGTCAAAAACAATTGTTGAAGACTATCACTAGGAGGAAATCTACTCATGCAAATGGTAATAGTCAGCAACCATCTAAGGTGCAGAACCCACATGTTGGGTCATGTGTTGAAGTGGGGAAGTTTGGGATTGACGAAGAGGTTGAAAGACTGAAACGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAACAACAAACGACCGATAACCAATTGCAAAATTTTGGGCAACGTGTGCAAGTGATGGAGCAGCGTCAGCAACAGATGATGTCGTTCCTGGCAAAGGCCATGAATAGTCCGGGATTCATGGCTCAGTTTTCACAGCAGCAGAGTGAAAGTAATAGACATGTTACCGCAGTTAAAAAGAGGCGGCTCCAGAGACAGGAAGAAGATAATTTAGCCACCAAGAATCACCATAATCCTCTTGATGGAAGTGTTGTCAAGTACCAGCCTTCGGTTAATGAGGCTGCTAAAACATTATTTAGCCAGATATTGCAAATGAACAATTCTACAAGGATGGACTCGTCCATTAACAACCTTGATGCATTCCTTATTGATGATATTCCTTCAGGCATTCCATTAGATAGCAGTAGTTCCTCCACCCAAGTTTCTGGTGTAACGCTTTCTGAGGTTCCACCTATTTCTGGGCAGTCGTTTGTGGCAGTAGAATCTCAATTTCCTGTTAGTTGTATGACCAGTAGCATGTCTGAGGTACAATCTTCCCCTGCTGTGTTGACTGACTGTGTCAATGCAGCTGAGTTTCCTGAATTAACAGCACATAACTGTCAAGACAATGTTTTGGATTTTGGTAAAGTTGAAGGGATGGCTACAGAAAGCAGCTTCGTCAATCCTGATCAAAATTTTGTGGGGTCTGTCAGTGAGATCAGTGAGAATGGCAAGGAATTGGACGTCTTATCAGCTGTTTTGAATGGGACACAGTCCTTGGAAACTGATGCTTTTTCTCCTGATGCAAATGAAATTTCTAAGCTTCCAGGAATCAATGATGAATTATGGGAACTGTTTTTTAGGCCAAGCCCACTTACTGGTGACACAGATGAAGATAAAGGTAGCTGCTCTCTAGGATATGGTTTGACTAAGGACCAGGAATTGTCATTAGACAAGGAGATTCAACAAGAAAAGATGGACAAGAAACAACATATGGACCATCTTACTCAACAGATGGAACTTCTTGCATCAGACTCATCGTTTTGTATATAA 1497 0.4202 MTAGSVNYVITPFLSKTYDMVDDSSTNTILSWGKNDNSFVVFSAADFSKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHEGFLRGQKQLLKTITRRKSTHANGNSQQPSKVQNPHVGSCVEVGKFGIDEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQNFGQRVQVMEQRQQQMMSFLAKAMNSPGFMAQFSQQQSESNRHVTAVKKRRLQRQEEDNLATKNHHNPLDGSVVKYQPSVNEAAKTLFSQILQMNNSTRMDSSINNLDAFLIDDIPSGIPLDSSSSSTQVSGVTLSEVPPISGQSFVAVESQFPVSCMTSSMSEVQSSPAVLTDCVNAAEFPELTAHNCQDNVLDFGKVEGMATESSFVNPDQNFVGSVSEISENGKELDVLSAVLNGTQSLETDAFSPDANEISKLPGINDELWELFFRPSPLTGDTDEDKGSCSLGYGLTKDQELSLDKEIQQEKMDKKQHMDHLTQQMELLASDSSFCI* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2640 498 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g2640 498 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g2640 498 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g2640 498 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g2640 498 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g2640 498 Gene3D - 6 103 IPR036388 -
Tpr3g2640 498 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Tpr3g2640 498 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g2640 498 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 467 IPR027725 -
Tpr3g2640 498 Coils Coil 137 157 - -
Tpr3g2640 498 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 7 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2640 Tpr-Chr3 26175704 26180371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2640 10 494 HSF AT5G16820 49.000 3.06e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr3g2640 HSF_DNA-bind 3.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2640 K09419 - gmx:100793665 521.161