Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2603 ATGTTGCAAGAAGGGTCATGTTCAGTTTCTTCACCCTTGAAGTTGTTCTCCATGATGTCAGCTTCACCTAGCTTAGGATCTTCACATTCTTGGCTTAAAGAACTGAAATCTGAAGAAAGGGGTTTGTATTTGATCCATTTGTTGCTCACTTGTGCAAATCAAGTAGCTGATTGTAATCTTGAGAATGCAAATGCAACACTTGAGCAAATTTCCATGCTTGCTTCCCCTGACGGCGACACCATGCAGCGAATCGCAGCTTATTTTACTGAAGCACTTGCTGATAGGATACTCAAAGCATGGCCTGGTCTCCATAAAGCACTTAATTCTACTAGAATGGTTATGGTTTCAGAAGAGATTCTTGTGCAGAAGCTCTTTTTTGAGCTTTTTCCTTTCTTGAAGGTAGCTTATATTCTTACAAATCAAGCTATCGTTGAAGCGATGGAAGGGGAGAAAATGATTCACATAATTGATCTCAATGCTGCTGAACCTGCTCAATGGATTGCACTCTTACAAGTTTTGAGCACGCGTCCCGAAGGCCCTCCGCATTTGAGAATCACCAGCGTTCATCCGAAGAAAGAAGTTCTCGACCAAATTGCTCGTAGACTGATTGAAGAAGCTGAAAAGTTGGATATACCATTCCAATTCAATCCTGTTGTCAGCAAATTAGAAAACCTCGAGTTTGAGAAACTTCGTGTTAAAACCGGCGAGGCATTAGCAATTAGTTCTATCCTCCAATTACATACCCTTTTAGCCTTGGATGATGAAACCATGAAGAGAAAATCTCCTCTTTTGTCAAAACCCTCAAATGGAACTCACTTGCAAAGATTCCATCCAATGAACCAAACATCATTAGGTGATTTGTTCGAGAAAGATACCAGAAGTCTTGAGTCAACCTCATCATCGCCGGCTTCGATTACCATTGAGAGTTTTCTCAATGCCTTGTGGAGATTATCACCAAAGGTAATGGTTGTAACAGAACAAGACTCCAATCATAATGGTTCAACTCTTATGGACAGGCTACTAGAAGCTTTATACTCTTATGCAGCATTATTTGATTGTTTGGAATCAACCGTCCCAAGAACCTCGTTGGAGAGATTAAGGGTGGAGAAGATGCTTTTCGGCGAGGAAATCAAGAACATTATTGCATGTGAGGGATTAGAAAGAAAGGAAAGGCATGAAAAGCTTGATAAGTGGTTTATGAGACTTGATTTTACTAGATTTGGTCATGTGCCTTTAAGTTATTTCGGTAGGTTGCAAGCAAGGAGGTTTCTGCAGAGTTGTGGTTGTGGAGGATATAAAATGAAGGAGGAAAATGGTTGTGTAGTAATATATTGGCAAGATAGGTCCTTGTTTTCAATATCAGCTTGGAGAGCTATGAAGTAA 1383 0.4027 MLQEGSCSVSSPLKLFSMMSASPSLGSSHSWLKELKSEERGLYLIHLLLTCANQVADCNLENANATLEQISMLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTRMVMVSEEILVQKLFFELFPFLKVAYILTNQAIVEAMEGEKMIHIIDLNAAEPAQWIALLQVLSTRPEGPPHLRITSVHPKKEVLDQIARRLIEEAEKLDIPFQFNPVVSKLENLEFEKLRVKTGEALAISSILQLHTLLALDDETMKRKSPLLSKPSNGTHLQRFHPMNQTSLGDLFEKDTRSLESTSSSPASITIESFLNALWRLSPKVMVVTEQDSNHNGSTLMDRLLEALYSYAALFDCLESTVPRTSLERLRVEKMLFGEEIKNIIACEGLERKERHEKLDKWFMRLDFTRFGHVPLSYFGRLQARRFLQSCGCGGYKMKEENGCVVIYWQDRSLFSISAWRAMK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2603 460 PANTHER BNAA06G02820D PROTEIN 306 359 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tpr3g2603 460 PANTHER BNAA06G02820D PROTEIN 1 260 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tpr3g2603 460 PANTHER BNAA06G02820D PROTEIN 364 459 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tpr3g2603 460 Pfam GRAS domain family 44 457 IPR005202 -
Tpr3g2603 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 364 459 IPR005202 -
Tpr3g2603 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 260 IPR005202 -
Tpr3g2603 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 306 359 IPR005202 -
Tpr3g2603 460 ProSiteProfiles GRAS family profile. 35 457 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2603 Tpr-Chr3 25449547 25452329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2603 1 460 GRAS Transcription Factor Family AT1G50420 65.762 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr3g2603 GRAS 3.5e-134 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2603 - - gmx:100814131 719.539