Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2593 ATGGCATCAATGGAAGACATAAACATGAGTACTGAGGAAATTCCACTTCCTGGATTCCGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAAAATATGGTTGTTGGCAAAAAACTTCGTTTTGATGTCATTGGTTTTCTCAACATCTATCACCATGATCCTTGGGACTTGCCAGATTTGTCAAAGGTTGGGGAAAGAGAATGGTATTTCTTTGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAACCGCACAACTGAAAAAGGGTTCTGGAAAGCAACCGGTTCGGACCGAAAAATTGTGACCTTATCCGATCCGAAGCGGATAATCGGGTTGAGGAAGACGTTGGTCTTCTACGAGGGAAGAGCTCCTCGTGGAACCAAGACCGATTGGGTCATGAACGAGTACCGTTTACCCGACAATAGCCCCTTGCCTAAGGACATAGTGTTATGCAAGATATATAGAAAGGCAACTTCCTTGAAAGTGTTGGAACAAAGAGCAGCAGAAGAGGAAGAAATGAAACAAATGTTGGGTTCACCTGCATCCCCACCTTCCTCTACGGACACAATCTCTTTTAGCTACACACAACAAGACCAACACGTGTCCCTACCCATGTTGTTCCAACAAGTCATTCCTAAGAAAGAATCTGAACCAGAAATTAATGAAACTGAAACTGATGACATGGTTTCTTTTAGTCATGAAAAAATTGTGAAAGATAACAAAAAGACTTGTGGAACATCTTTGCAATTGCCCTTAGGGAAGGACAATGTGCCTGAGTTACAGTTACCTATAGCTGCGGATTGGACCCAAGATACGTTTTGGGCTCAGCTTAATAGTCCTTGGCTACAAAATTGGACTGCTTACTCCAACATCCTTAATTTCTAA 900 0.4233 MASMEDINMSTEEIPLPGFRFHPTEEELLDFYLKNMVVGKKLRFDVIGFLNIYHHDPWDLPDLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRLPDNSPLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMLGSPASPPSSTDTISFSYTQQDQHVSLPMLFQQVIPKKESEPEINETETDDMVSFSHEKIVKDNKKTCGTSLQLPLGKDNVPELQLPIAADWTQDTFWAQLNSPWLQNWTAYSNILNF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2593 299 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Tpr3g2593 299 Gene3D NAC domain 24 165 IPR036093 GO:0003677|GO:0006355
Tpr3g2593 299 ProSiteProfiles NAC domain profile. 15 161 IPR003441 GO:0003677|GO:0006355
Tpr3g2593 299 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 299 - -
Tpr3g2593 299 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 8 299 - -
Tpr3g2593 299 SUPERFAMILY NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2593 Tpr-Chr3 25092445 25095062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2593 12 296 NAC Transcription Factor Family AT2G17040 60.627 1.58e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g2593 NAM 3.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2593 - - gmx:732555 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2593 3 25092445 25095062 Tpr3g2593 3 25092445 25095062 ECH