Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2592 ATGGCTTTTTTTCTTTGCTTCTTCTTTTTCTTTCTTGCTTCATCTGCCACTGCTTGTGATCGTTGCTTACACCAGTCCAAAGCTTCTTATTTCAACAAAGCTTCATCTCTTTCATCTGGAGCATGTGGCTATGGTTCTTTAGCACTTGACTTTAGTGGTGGACACATAGCAGCTGGTGTTTCTTCAATTTTCCATGACGGAGCTGGTTGTGGTGCTTGTTTTCAGGTAAGATGCAAGAACCAAGCACTATGCACAAAAGAAGGTACAAGAGTGGTATTAACTGATCTTAATCACAATAATCAAACTGATTTTGTTCTAAGTAGTAGAGCTTTCTCTGCCATGGCTCAAAAAGATATGAGCCAACAAATTTTGAAGCTTGGCATTGTTGACATTGAATACAAAAAAGTACCTTGTGAGTACAAAAAACAAAATTTGGCAGTTCGTGTTGAAGAATCAAGCAAAAAATCAAATTATTTAGCAATTAAATTTTTGTATCAAGGTGGTCAAACAGAGATAGTAGGTGTTGATGTAGCTCAGGTTGGATCGTCACAATGGACATACATGAGTAGAAATCATGGGGCAGTGTGGGACACAAGTAGGGTTCCACAAGGAGCATTGCAACTTAGGTTAGTGGTTACAGCAGGATATGATGGAAAATGGATTTGGGCAAAAAAAGTGCTTCCAGCTGATTGGAAAAATGGAGTGATATATGATTCTGATGTTCAGATTACAGATATTGCACAAGAGGGTTGTTCAACATGTGATGATGATACATGGTCATGA 783 0.3831 MAFFLCFFFFFLASSATACDRCLHQSKASYFNKASSLSSGACGYGSLALDFSGGHIAAGVSSIFHDGAGCGACFQVRCKNQALCTKEGTRVVLTDLNHNNQTDFVLSSRAFSAMAQKDMSQQILKLGIVDIEYKKVPCEYKKQNLAVRVEESSKKSNYLAIKFLYQGGQTEIVGVDVAQVGSSQWTYMSRNHGAVWDTSRVPQGALQLRLVVTAGYDGKWIWAKKVLPADWKNGVIYDSDVQITDIAQEGCSTCDDDTWS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2592 260 PANTHER EXPANSIN-B3 5 256 - -
Tpr3g2592 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Tpr3g2592 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Tpr3g2592 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Tpr3g2592 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Tpr3g2592 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Tpr3g2592 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Tpr3g2592 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Tpr3g2592 260 Gene3D - 140 244 IPR036749 -
Tpr3g2592 260 Gene3D - 12 139 IPR036908 -
Tpr3g2592 260 PANTHER EXPANSIN-LIKE A1-RELATED 5 256 - -
Tpr3g2592 260 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Tpr3g2592 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Tpr3g2592 260 SUPERFAMILY Barwin-like endoglucanases 8 141 IPR036908 -
Tpr3g2592 260 Pfam Lytic transglycolase 57 133 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2592 Tpr-Chr3 25078084 25080372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2592 3 254 Expansin Gene Family AT3G45960 66.142 1.47e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2592 - - gmx:100819849 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2592 3 25078084 25080372 Tpr3g2592 3 25078084 25080372 ECH