Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2579 ATGAGTTCAACTAACTCAAGGATAGCTAATGAAAAACTTTCGATGTCTGTTCAGAGTAACGATAAAAATGGTTTGGGGCCTAAAAAACCTTTAAAAGGGAAGTTTCAGGCTTCTATTGGAGCGGATGAGTTTTTCAGTGCTGAGACATGGAAAGCAGCTTTGACAGAATTAGTGGCAACTGCCTCTCTAATGGTGACCTTGTCTACTTCCATTATTGCATGCTTGGACTCACATGAAGTTGATCCTAAGCTTATAATTCCCTTTGCAGTTTTCATCAATGCATTCTTGTTCTTAATGGCCACAGTTCCTCTATCTGGTGGCCACATGAGCCCTGTTTTCACATGCATAGCTGCACTTAAAGGTGTTGTAACACTTTACCGTGCCCTCCTTTATGTGATAGCACAATGCATTGGCTCAATAATTGGTTTCTATATACTAAAGTGTGTGATGGAACCAAGATTAGTAAACACATATTCATTAGGAGGTTGTGCTATTGGTGGCAAAGGACTTACTTCTAGTATTAATCAGTATGAAGCCTTGTTATTGGAAATCTCTTGCACATTTTTGGTACTTTTTTTAGGTGTCACATTGGCTTTTGACAAAAAAAGGTCAAAGAATATGGGCTTACCAATGGTATGTTTGGTGATAGCTGGGGCCATGGCGTTGGCAGTATTTGTGTCGATAACGATAACGGGTCGGCCCGGTTATGCCGGTGTTGGGCTTAATCCGGCGAGATGCTTAGGCGCGGCGTTGCTACATGGGGGTTCGTTATGGTATGGACATTGGGTTTTTTGGGTTGGGTCTATCATAGCTTGTTTAATCTATTACAGTGTCTCTATCAACCTGCCAAACGAGGGTTCAATTTCGGATGATGGAGAATATGTTGTCTTAAAGTTGGCTCGTGGTTCTCTTGATACTATTCGTCATGGTGATATTTCAAATGATGTCACAATAGAACGAAGTGACTTTCAAGAATATTTATCGTGTACTACATAA 996 0.4066 MSSTNSRIANEKLSMSVQSNDKNGLGPKKPLKGKFQASIGADEFFSAETWKAALTELVATASLMVTLSTSIIACLDSHEVDPKLIIPFAVFINAFLFLMATVPLSGGHMSPVFTCIAALKGVVTLYRALLYVIAQCIGSIIGFYILKCVMEPRLVNTYSLGGCAIGGKGLTSSINQYEALLLEISCTFLVLFLGVTLAFDKKRSKNMGLPMVCLVIAGAMALAVFVSITITGRPGYAGVGLNPARCLGAALLHGGSLWYGHWVFWVGSIIACLIYYSVSINLPNEGSISDDGEYVVLKLARGSLDTIRHGDISNDVTIERSDFQEYLSCTT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2579 331 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 16 311 - -
Tpr3g2579 331 Pfam Major intrinsic protein 46 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g2579 331 PANTHER AQUAPORIN-LIKE 16 311 - -
Tpr3g2579 331 Gene3D Glycerol uptake facilitator protein. 37 283 IPR023271 -
Tpr3g2579 331 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g2579 331 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g2579 331 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g2579 331 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g2579 331 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g2579 331 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g2579 331 SUPERFAMILY Aquaporin-like 48 274 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2579 Tpr-Chr3 24935160 24937018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2579 44 274 Major Intrinsic Protein MIP AT2G37180 30.645 4.17e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2579 K09866 - gmx:100804160 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2579 3 24935160 24937018 Tpr3g2579 3 24935160 24937018 ECH