Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2566 ATGGCTATAACTAACATGATTCCGGGATTTCGATTCCGTCCTACTGGAGTTGAATTGTTGAAGTACTTTTTGAAAAGGAAAGTGATGGGAAAAAAGTTTCATAATGATGTGATCGCTGAAATTGACATATATAAACATGCTCCTTGGGATCTACCATTTAAGTCTTATTTACAAAATGGCGATTTAGAATGGTATTTCTTCTGCCCAATTTCGAAGAAGCATGGAAGTGGAAGCGGAGGGAGGTTGAATCGAGCTACGGAAATTGGGTTTTGGAAAGCTACCGGTAAGGATAGAGTTGTGCAACATAATAATCAAACGGTTGGTATGATTAAAACCTTGGTATTTCACACCGGAAAAGCTCCTCGTGGTGATCGAACTGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTGGTTGATAGAGGAATTGTTCAGGATTCTTATGTAATCTGTAAAGTGTTTCAAAAGGAAGGTCTTGGCCCTAGGAATGGTGCACAATATGGGAGGCCATTTAATGAGGAAGATTGGAGTGACGATGAAGTTGGATTACCTTTTTCTGAATCGGCTGCGCCAGTTCCCGGTTTGGCTGTGACAACAACTAATAGTTCTGTTCTAAATGATGCTGTCTATTCATGTCAAACAGGATTGATCTCTTCTCCCGATGCTGTCTATTCATGTCAAACAGGATTGGTCGCTTCTCCTGATGCTGTGAGATCATGTGAAACAGGATTGATACCTTTTCCCGATCCTGCAAATTCATGTCAAATGAGATTGATGCTGCCTTCTCCCGACCCTGTAAATTCATGTCAAATCGGATCAATGCCTTCGAGTCAAATGGGATTGATGATGCCTTCTCCCGACCCTGTAAATTCATGCCAAATCGGATCAATGCCTCTCGACCCTGCAAATTCATATCAAACAGGATGGATGCCTTCTTCCGACCCTGCAAATTCATGTCAGACAGGATTGATGCCTTCTGCTGACCCTGCAAATCATTCATATCCAGACAATCAAGCTGTTAATAATGATGATATTTTATCAATGCTTGATATTTTCAATGACAGCGTCATATTTCCTGAGGAAAATATTGCTGAAGGTGCACTTTTAAGTGACATTTTTGAGGGTTTGGGAGACCTAGACTGTTCGGCGTTGGGATTCTTTGGCCAGAATGCCGAGTTTAGCACAGACGGAATGGCTGCTATGGGTGATGTTGGGCACTTAGATTTCATTGAGTTGACTGATCTTGACTCTGAGTTGTTCTGGCAGAGTCAAAATAAATAA 1287 0.4149 MAITNMIPGFRFRPTGVELLKYFLKRKVMGKKFHNDVIAEIDIYKHAPWDLPFKSYLQNGDLEWYFFCPISKKHGSGSGGRLNRATEIGFWKATGKDRVVQHNNQTVGMIKTLVFHTGKAPRGDRTDWVMHEYRLEDKDLVDRGIVQDSYVICKVFQKEGLGPRNGAQYGRPFNEEDWSDDEVGLPFSESAAPVPGLAVTTTNSSVLNDAVYSCQTGLISSPDAVYSCQTGLVASPDAVRSCETGLIPFPDPANSCQMRLMLPSPDPVNSCQIGSMPSSQMGLMMPSPDPVNSCQIGSMPLDPANSYQTGWMPSSDPANSCQTGLMPSADPANHSYPDNQAVNNDDILSMLDIFNDSVIFPEENIAEGALLSDIFEGLGDLDCSALGFFGQNAEFSTDGMAAMGDVGHLDFIELTDLDSELFWQSQNK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2566 428 PANTHER PLANT NAC DOMAIN PROTEIN 1 249 - -
Tpr3g2566 428 PANTHER PLANT NAC DOMAIN PROTEIN 286 416 - -
Tpr3g2566 428 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Tpr3g2566 428 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Tpr3g2566 428 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Tpr3g2566 428 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 249 - -
Tpr3g2566 428 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 286 416 - -
Tpr3g2566 428 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2566 Tpr-Chr3 24846781 24848201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2566 1 182 NAC Transcription Factor Family AT5G64060 63.187 1.72e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g2566 NAM 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2566 - - mtr:MTR_8g093580 600.512