Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2553 ATGGGTTTGTGTTCAATTATTATAAATTTAAATGGTTTTATTCTTCTTATTCTTGTTGTATGTTGGAACAAACAAGTTTATGGTTATGGTGTGACAGAGCAAGAAGAAGACAGAGTGTATGAATTACCAGGGCAACCTTTGGTGAATTTCAAACAATATTCTGGTTATATTACTGTTAATGAAAGTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAATCTTATGATCAACCTCAACAAAAACCTCTTCTTCTTTGGCTCAATGGAGGCCCTGGATGTTCTTCAATAGGTTATGGAGAAGCAGAGGAACTTGGACCCTTCTTTCCCCAAAATAGCACCCAACCTAAGCTCAAGTTGAACCCTTATTCTTGGAATAAAGCTGCAAATCTTTTGTTTCTTGAATCTCCTGTTGGAGTGGGATTTTCCTACACCAATACCACTAGTGATATACAAGAGATTGGTGACACCATTACTGCTAAGGATTCACACACATTTCTCATCAATTGGTTTAAAAGATTTCCTCAATTCAAATCACATGATTTCTACATTGCTGGTGAAAGCTATGCAGGACACTATGTTCCACAACTTTCTGAGCTTATTTTGGATAATAATCACAATTCTTCTGAGGAAGATTACATCAACTTCAAAGGGATCATGATTGGAAATGCACTATTGGATGATGAAACAGATCAAAAGGGTATGATAGAATATGCATGGGATCATGCTGTTATATCTGATGGATTATACCATAACATTACAACCATATGCAACTTCAGCCATCCAATTCAAAATCAAACAGATGAATGCAATACAGAACTTAACAAATACTTTGATGTGTATAAGATTATAGACATGTATAGTTTGTACACTCCCATGTGTTTCAGTAACATCAGCAACACAAGAAGGGAATCACCCGTCATCAAAGGCGCGAACCCTCGTGCCCTTTCCAAATTTGACGGATGGCATAGATATCTTGCAGGATATGATCCATGTGCATCAGATTATACTGCAGCATATCTAAATAGGCCAGAAGTTCAAAAGGCACTGCATGCTAATGTCACCAATATTCCATATCCATGGTCTCATTGCAGTAATAATATATCATTTTGGAATGACTCACCGGTGTCCATGCTTCCCGTCCTCAAGAAACTCATTGCCGGCGGTCTCCGTGTATGGGTTTACAGTGGAGATACAGATGGAAGAATTCCTGTAACTGCAACAAGATACACACTAAAGAAATTGGGGCTCCCTATAGTTCAAGATTGGACTCCTTGGTATACGAGTCGTCAGGTGGGAGGATGGAACATTGTATATGATGGTTTAACATTTGTGACAATAAGAGGAGCTGGTCACCAAGTTCCTACTTTTACTCCCAAACAAGCACTTCAGCTAATTCGACACTTCTTAGTCAATAAGAAATTACCACAACATCCTATTTAA 1440 0.3806 MGLCSIIINLNGFILLILVVCWNKQVYGYGVTEQEEDRVYELPGQPLVNFKQYSGYITVNESHGRALFYWFFESYDQPQQKPLLLWLNGGPGCSSIGYGEAEELGPFFPQNSTQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTTSDIQEIGDTITAKDSHTFLINWFKRFPQFKSHDFYIAGESYAGHYVPQLSELILDNNHNSSEEDYINFKGIMIGNALLDDETDQKGMIEYAWDHAVISDGLYHNITTICNFSHPIQNQTDECNTELNKYFDVYKIIDMYSLYTPMCFSNISNTRRESPVIKGANPRALSKFDGWHRYLAGYDPCASDYTAAYLNRPEVQKALHANVTNIPYPWSHCSNNISFWNDSPVSMLPVLKKLIAGGLRVWVYSGDTDGRIPVTATRYTLKKLGLPIVQDWTPWYTSRQVGGWNIVYDGLTFVTIRGAGHQVPTFTPKQALQLIRHFLVNKKLPQHPI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2553 479 Pfam Serine carboxypeptidase 44 470 IPR001563 GO:0004185|GO:0006508
Tpr3g2553 479 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Tpr3g2553 479 Gene3D alpha/beta hydrolase 33 295 IPR029058 -
Tpr3g2553 479 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 478 IPR001563 GO:0004185|GO:0006508
Tpr3g2553 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Tpr3g2553 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Tpr3g2553 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Tpr3g2553 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 441 454 IPR001563 GO:0004185|GO:0006508
Tpr3g2553 479 SUPERFAMILY alpha/beta-Hydrolases 35 476 IPR029058 -
Tpr3g2553 479 PANTHER CARBOXYPEPTIDASE 31 478 - -
Tpr3g2553 479 ProSitePatterns Serine carboxypeptidases, histidine active site. 441 458 IPR033124 GO:0004185
Tpr3g2553 479 Gene3D - 331 367 - -
Tpr3g2553 479 Gene3D - 377 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2553 Tpr-Chr3 24695097 24703194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2553 339 474 Calmodulin-binding Proteins AT2G22960 29.197 6.98e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2553 K16297 - gmx:100781503 809.675