Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2540 ATGGAAAACTATGATGAGTCTGCTGATGTTGATGTTGATTACATTCATTCAAGTGAACGTGCTTCATGGGACGTGGAGTTGGACGATGAAGAAAGTTATTCGGTATCTAATATGGATCAAAGTTCAGTGGGTGGCGATCATTCAACTGATGATGGCAATGATGATGGACATGCAGATGGAGGCAATAGGAAGATAAGGTTTGATACCATAACTGCTGAAGAAATTCGTTCTATGGAATCTGCCACTCTTAATGAAGCTTATGACTTTTATTACCGTTATGGTAAGTATAATGGTTTTGCTGTTAGGAAAGGTGATAGTAGGGTAAGAGGTAGTGAAGGTAATAAAGTAATAAAAATGAAGCTGTTTGTATGCAACAAACACGGTGTAAGAGAGAAGAGACACTTAGTTAGGATAGATAGGAAATTAGAACATAGACGTTTGACCCGCACTAAATGTGGAGCCAGGCTTCGTGTGAAATACAATGCTGAAAAGGATAGATATGTAGTTTCAGCTTTTGAAGAGACTCATAACCATGAATTATCCCCAGCTAGGTTTGTGCACTTACACCCCGTATATCGTAAAATTTCTGAAGTAGATAAGGCTCAGGTGGATGGTCTTCAGAAACGTGGCATTAGAACATGTCATATAATGGGGTACATGGTTGCACAGAAGGGTGGATATGCTGATGTTGGTTTTACAAAGAAAGATTTGTACAACTATTTTGATAAAAAAATGCGTGCTGTTATTAAAGATGGTGATGTTGCCGCATCTTTAAACTACCTGAATATGAAGTCGTCTAGTGATCCCATGCTTTATGCTGAGTATGCTGTAGACAACGTTAATGGAAGAATGAAGACTCTTTTTTGGGCTGATGGGATTAGTAGGACCGACTATTTTTGTTTTGGTGATGTGCTTGCATTTGACACGACTTACAGGAAGAACAAGTACAACTATCCGTTGGTTGTATTTTCAGGGTGTAACCACCACTCTCAAACAGTAATTTTTGGTGCTGCATTGGTGTCAGATGAAACGACGGAGACGTATAAGTGGGTGTTGAGGTGTTTCCTAGAATGTATGGATGGTAAACAACCAAAAGCGGTGGTAACAGATGGGGATGGGGCAATGAGAGAGGCCATAAAACAGATATTTCCCGATGCTAACCATAGGTTATGTGCTTGGCATTTGAATAAGAATGCAGGTGAGAATGTGAAGAACAGAAATAATTTTTTGGACGGTTTTTCAAAGGCCATGTACTCAAATTTTACAATAGATGAATTTGAAGATTATTGGTCACAAATGATTAAAGAAAATGGAGTGCAAGGACATCCTTGGGTAGTCAAAACGTACGATAATAGGTCACTGTGGGCTACTGCATATCTACGAGATAATTTTTTTGGACGTATAAGAACTACGTCGCAGTGCGAAGCTGTTAATGCAATAATTAAGAGTTATGTCAGGAAGCAAGGATGCATTTTTGAATTTATGAACAACTTTGATCAGGCTTTGAGAGATTATAGAAATAATGAGTTGGTTGCTGATTTTAAATCATCGTCTACAGATCCTGTGTTGTCGACGCAACTGCCTGTGATTGAGAGTCATGCTGGTAAAATATATACGGCGGAGCTTTTCAAAGAAGTTAGACATGAAATATTGAAAGCCGGTGAATTGATAGTTAGGGAGAAAAGTGAAGTCGGGGGTAGGAAGACTTATAGATTGACAAAATATTGTAAGGATGGTTATGAAAGAAGTGTTGTTTATGATGGTTCGACATTTGAGTGTTTATGTAAGAGGTTTGAGTCCCGTGGCATTCCGTGTTCTCATATTTTTTACGTAATGAAGGAAGAACACGTTGATCGTATCCCAAGCAATTTGGTTTTGACGCGATGGACCAAGGATGCAAAAATTCAGTTTTTGAACAGCAGCAATTTTAATGATAATGTTGATGTGAATACGATTGCCGAAGCTCGTTTTGGTTCATATTGTACTGTTTTAACAGAGTTCTGCAAAGAAGCTTCAAAAAAAGATGGTGTTTATGCACAAATAATGGAAGACCTGATGCAGCTGAAAAAAAAGTATTGCAGTAAAGATGATGATGCAATCGGTACACAAAAGTCAGCAGTAGGCGATCCAGTTATGGTTAAGTGTAAAGGTGCTCCAAAGAAAAAGAAGAATGTCGCAAAATCTGCCAGGCGCCGTTCAAATACCAAAAATACAACTCCTAATTCGAAGAGATGTTCGGGTACACAACAAACGACAGAACAAGTGGCAGAACCAAATGTCGATTTGTGCTCGGTGTCGATTTCTGATTCTGTAAGCCAAATTGCTGAGAAAAGGAAAAGAAAAGAAGCTTGCAATGTTCAAAGAAGTGTGCAAAACAAAACTTCGTATCCGCCGAGATACCGCGCTGCTACCGTTACGACACCTACACATATGGAATTACAGAGCACAAGCAGAAATATGAATCAACAACTGTATCCTATGATGCCTATGGTACATCCGATGATTCAGCCGATGCCCATACAACCCATATACCCAATGTATGGACTGCAACCTGGAATGCAACAAGGAATGCAACATGGAATGAATGTTGGTCAAAGTTCATGCTATGGTCTGCTACAACATGTTATGAAATCTGCTAAGAATGATTGA 2649 0.3903 MENYDESADVDVDYIHSSERASWDVELDDEESYSVSNMDQSSVGGDHSTDDGNDDGHADGGNRKIRFDTITAEEIRSMESATLNEAYDFYYRYGKYNGFAVRKGDSRVRGSEGNKVIKMKLFVCNKHGVREKRHLVRIDRKLEHRRLTRTKCGARLRVKYNAEKDRYVVSAFEETHNHELSPARFVHLHPVYRKISEVDKAQVDGLQKRGIRTCHIMGYMVAQKGGYADVGFTKKDLYNYFDKKMRAVIKDGDVAASLNYLNMKSSSDPMLYAEYAVDNVNGRMKTLFWADGISRTDYFCFGDVLAFDTTYRKNKYNYPLVVFSGCNHHSQTVIFGAALVSDETTETYKWVLRCFLECMDGKQPKAVVTDGDGAMREAIKQIFPDANHRLCAWHLNKNAGENVKNRNNFLDGFSKAMYSNFTIDEFEDYWSQMIKENGVQGHPWVVKTYDNRSLWATAYLRDNFFGRIRTTSQCEAVNAIIKSYVRKQGCIFEFMNNFDQALRDYRNNELVADFKSSSTDPVLSTQLPVIESHAGKIYTAELFKEVRHEILKAGELIVREKSEVGGRKTYRLTKYCKDGYERSVVYDGSTFECLCKRFESRGIPCSHIFYVMKEEHVDRIPSNLVLTRWTKDAKIQFLNSSNFNDNVDVNTIAEARFGSYCTVLTEFCKEASKKDGVYAQIMEDLMQLKKKYCSKDDDAIGTQKSAVGDPVMVKCKGAPKKKKNVAKSARRRSNTKNTTPNSKRCSGTQQTTEQVAEPNVDLCSVSISDSVSQIAEKRKRKEACNVQRSVQNKTSYPPRYRAATVTTPTHMELQSTSRNMNQQLYPMMPMVHPMIQPMPIQPIYPMYGLQPGMQQGMQHGMNVGQSSCYGLLQHVMKSAKND* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2540 882 Pfam FAR1 DNA-binding domain 88 181 IPR004330 -
Tpr3g2540 882 MobiDBLite consensus disorder prediction 731 753 - -
Tpr3g2540 882 ProSiteProfiles Zinc finger SWIM-type profile. 580 616 IPR007527 GO:0008270
Tpr3g2540 882 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 63 756 - -
Tpr3g2540 882 Pfam MULE transposase domain 304 398 IPR018289 -
Tpr3g2540 882 MobiDBLite consensus disorder prediction 21 62 - -
Tpr3g2540 882 MobiDBLite consensus disorder prediction 717 753 - -
Tpr3g2540 882 SMART 26again6 591 618 IPR006564 GO:0008270
Tpr3g2540 882 MobiDBLite consensus disorder prediction 48 62 - -
Tpr3g2540 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 756 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2540 Tpr-Chr3 24574450 24577302 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr3g2540 MULE 3e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2540 - - ccaj:109792835 804.668