Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr3g2532 | ATGGCCAAGTCAAGCAAGAAATCCGCTACCAAAGTTGAAGATGCTCCCGTTGTTGTTTCTCCAGCCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGCTAAGGCAGTGAGTGCAAAGAAGCAAAAGCTAGAAGAGGTTAAGCAAAAGAAGGAGGCTGAGTTGAAGAAGGTTAAGGAAGAAAGTAGTTCAGATGAATCCTCTGATGAGTCTGAGGACGAGAAACCGGTCGCTCCCGCAAAAAAGACCCCAGCCAAAAATGGGGATGTGAAGAAAGCCCCCAAGCCAGTTTCTAGTTCCAGCTCAGAGGAGTCTGAAGACTCTTCTGATGAGGAAGCTAGTGTAAAGAAGCCAACTAAAGTAGAGGCTGCTAAGGTTACTAAGGTGGTGCCAAAGGAGGAAAGTTCTGACGATTCAGAGTCAGATGATGATTCATCTGAAGATGAGAAACCTGCAGTAAAAGCTGTTGCTTCTAAAAATGTGAGTGCCCCAGCAAAGAAAGAAGCTAGTTCTTCTGATGATTCTTCCGATGAAGACTCTGATGAAGATGAAGCTCCAAAACCAAAGGCTGCCCCTGCTGCAGCCAAGAACGGATCTGTTCCTGCAAAGAAGCCTGCTGAAAGCTCTGACTCTGACAGCTCAGAGTCTGATTCTGATGATGACAAGAACAAGAAAAAACCTGCAACTACTGTTCCCAAAACTGAAAGCTCAGATGATGATTCAAGTGAGGACAGCTCTGATGAAGAGGATACAAAGCCTACAAAGCCTGCTGCAACTCCTAAGGCTGCTGCAGCTGCGAAGGAAGATAGCTCTTCTGATGAAGATAGCAGCTCTGACGAAGACACTGAAACCGGAAAATCTAATGGAAACAAGAAAACTGTGGCTGCTGTGAAGACACAGGATAAAATGGAAGTTGATGATGACAGTGATAGTTCTGACGACAGTGAGGAGGAGAGTGACGAAGAACCCGCCAAAACTCCCCAGAAAAAGGTTGTCAAAGATGTGGAGATGGTTGATGCTAACAAATCTGCAAAAAAAGCTCCTGCTACCCCAGCTACACCCAATCAGAGTGGCGGTTCAAAGACATTGTTTTGTGGAAACTTGTCATTTAGTGTGCAGCGAGCTGATATAGAAAATTTCTTCGGTGAAGACGTTGTTGATGTCCGTCTTGCTAATGATGAGGATGGAAGGTTTAAAGGATTTGGACATGTTGAGTTTGCAACTGCAGAGGCAGCCCAAAGTGCACTTGAGTTGAATGGGCAAGAATTGTTGCAACGTGCCATCCGACTTGATTTAGCTCGGGAGAGGGGGGCTTATACTCCTAATGCTAACAGCAACTACTCAGCTCAAAGTGGTGGAAGATCTCAAACAATATTTGTCAAAGGTTTTGATAGTAATCTAGGGGAGGATGAGATAAGATCAAAATTGGAAGAACATTTTGGTTCCTGTGGGGAAGTTACAAGGGTGTCAATCCCCAAAGATTTTGACTCTGGTTATGTCAAGGGGTTTGCATACATGGACTTCAAAGATTCTGACAGCATGAGCAAAGCTCTAGAACTCAGTGGGAGTGAACTTGGAGGTTATGCTTTGACAGTGGATGAAGCCAAACCTAGAGATAGTCAAGGTTCTGGGAGTAGAGGAGGTCCTGCTGGAAGGCGTGGTCGCTTTAGTAGTGGAAGGGGGGATAGTGGAAGAGGTCGATTTGGTAGCGGAAGGGGGGATAGCGGAAGAGGTCGATTTGGTGGAAGGGATAGTGGCCGTAGAGGTCGAGGAATAGGTCGTACTGGATTCAACAAACCAGAAGGAACGAAGAAAACTTTTGCTGATGACTAG | 1839 | 0.4573 | MAKSSKKSATKVEDAPVVVSPAKSGKKGKRQAEEEAKAVSAKKQKLEEVKQKKEAELKKVKEESSSDESSDESEDEKPVAPAKKTPAKNGDVKKAPKPVSSSSSEESEDSSDEEASVKKPTKVEAAKVTKVVPKEESSDDSESDDDSSEDEKPAVKAVASKNVSAPAKKEASSSDDSSDEDSDEDEAPKPKAAPAAAKNGSVPAKKPAESSDSDSSESDSDDDKNKKKPATTVPKTESSDDDSSEDSSDEEDTKPTKPAATPKAAAAAKEDSSSDEDSSSDEDTETGKSNGNKKTVAAVKTQDKMEVDDDSDSSDDSEEESDEEPAKTPQKKVVKDVEMVDANKSAKKAPATPATPNQSGGSKTLFCGNLSFSVQRADIENFFGEDVVDVRLANDEDGRFKGFGHVEFATAEAAQSALELNGQELLQRAIRLDLARERGAYTPNANSNYSAQSGGRSQTIFVKGFDSNLGEDEIRSKLEEHFGSCGEVTRVSIPKDFDSGYVKGFAYMDFKDSDSMSKALELSGSELGGYALTVDEAKPRDSQGSGSRGGPAGRRGRFSSGRGDSGRGRFGSGRGDSGRGRFGGRDSGRRGRGIGRTGFNKPEGTKKTFADD* | 613 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr3g2532 | 612 | SUPERFAMILY | RNA-binding domain, RBD | 355 | 456 | IPR035979 | GO:0003676 | |
Tpr3g2532 | 612 | SUPERFAMILY | RNA-binding domain, RBD | 453 | 569 | IPR035979 | GO:0003676 | |
Tpr3g2532 | 612 | MobiDBLite | consensus disorder prediction | 219 | 241 | - | - | |
Tpr3g2532 | 612 | Gene3D | - | 352 | 442 | IPR012677 | - | |
Tpr3g2532 | 612 | MobiDBLite | consensus disorder prediction | 1 | 335 | - | - | |
Tpr3g2532 | 612 | MobiDBLite | consensus disorder prediction | 75 | 91 | - | - | |
Tpr3g2532 | 612 | MobiDBLite | consensus disorder prediction | 26 | 66 | - | - | |
Tpr3g2532 | 612 | MobiDBLite | consensus disorder prediction | 534 | 612 | - | - | |
Tpr3g2532 | 612 | MobiDBLite | consensus disorder prediction | 308 | 323 | - | - | |
Tpr3g2532 | 612 | Gene3D | - | 446 | 595 | IPR012677 | - | |
Tpr3g2532 | 612 | PANTHER | BNAA08G02930D PROTEIN | 194 | 578 | - | - | |
Tpr3g2532 | 612 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 458 | 539 | IPR000504 | GO:0003723 | |
Tpr3g2532 | 612 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 194 | 578 | - | - | |
Tpr3g2532 | 612 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 365 | 431 | IPR000504 | GO:0003723 | |
Tpr3g2532 | 612 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 461 | 532 | IPR000504 | GO:0003723 | |
Tpr3g2532 | 612 | CDD | RRM2_NUCLs | 459 | 537 | IPR034350 | - | |
Tpr3g2532 | 612 | MobiDBLite | consensus disorder prediction | 112 | 137 | - | - | |
Tpr3g2532 | 612 | Coils | Coil | 29 | 66 | - | - | |
Tpr3g2532 | 612 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 363 | 437 | IPR000504 | GO:0003723 | |
Tpr3g2532 | 612 | SMART | rrm1_1 | 459 | 535 | IPR000504 | GO:0003723 | |
Tpr3g2532 | 612 | SMART | rrm1_1 | 364 | 433 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr3g2532 | Tpr-Chr3 | 24521510 | 24526272 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr3g2532 | 361 | 538 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 30.000 | 4.95e-10 | 60.5 |