Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2532 ATGGCCAAGTCAAGCAAGAAATCCGCTACCAAAGTTGAAGATGCTCCCGTTGTTGTTTCTCCAGCCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGCTAAGGCAGTGAGTGCAAAGAAGCAAAAGCTAGAAGAGGTTAAGCAAAAGAAGGAGGCTGAGTTGAAGAAGGTTAAGGAAGAAAGTAGTTCAGATGAATCCTCTGATGAGTCTGAGGACGAGAAACCGGTCGCTCCCGCAAAAAAGACCCCAGCCAAAAATGGGGATGTGAAGAAAGCCCCCAAGCCAGTTTCTAGTTCCAGCTCAGAGGAGTCTGAAGACTCTTCTGATGAGGAAGCTAGTGTAAAGAAGCCAACTAAAGTAGAGGCTGCTAAGGTTACTAAGGTGGTGCCAAAGGAGGAAAGTTCTGACGATTCAGAGTCAGATGATGATTCATCTGAAGATGAGAAACCTGCAGTAAAAGCTGTTGCTTCTAAAAATGTGAGTGCCCCAGCAAAGAAAGAAGCTAGTTCTTCTGATGATTCTTCCGATGAAGACTCTGATGAAGATGAAGCTCCAAAACCAAAGGCTGCCCCTGCTGCAGCCAAGAACGGATCTGTTCCTGCAAAGAAGCCTGCTGAAAGCTCTGACTCTGACAGCTCAGAGTCTGATTCTGATGATGACAAGAACAAGAAAAAACCTGCAACTACTGTTCCCAAAACTGAAAGCTCAGATGATGATTCAAGTGAGGACAGCTCTGATGAAGAGGATACAAAGCCTACAAAGCCTGCTGCAACTCCTAAGGCTGCTGCAGCTGCGAAGGAAGATAGCTCTTCTGATGAAGATAGCAGCTCTGACGAAGACACTGAAACCGGAAAATCTAATGGAAACAAGAAAACTGTGGCTGCTGTGAAGACACAGGATAAAATGGAAGTTGATGATGACAGTGATAGTTCTGACGACAGTGAGGAGGAGAGTGACGAAGAACCCGCCAAAACTCCCCAGAAAAAGGTTGTCAAAGATGTGGAGATGGTTGATGCTAACAAATCTGCAAAAAAAGCTCCTGCTACCCCAGCTACACCCAATCAGAGTGGCGGTTCAAAGACATTGTTTTGTGGAAACTTGTCATTTAGTGTGCAGCGAGCTGATATAGAAAATTTCTTCGGTGAAGACGTTGTTGATGTCCGTCTTGCTAATGATGAGGATGGAAGGTTTAAAGGATTTGGACATGTTGAGTTTGCAACTGCAGAGGCAGCCCAAAGTGCACTTGAGTTGAATGGGCAAGAATTGTTGCAACGTGCCATCCGACTTGATTTAGCTCGGGAGAGGGGGGCTTATACTCCTAATGCTAACAGCAACTACTCAGCTCAAAGTGGTGGAAGATCTCAAACAATATTTGTCAAAGGTTTTGATAGTAATCTAGGGGAGGATGAGATAAGATCAAAATTGGAAGAACATTTTGGTTCCTGTGGGGAAGTTACAAGGGTGTCAATCCCCAAAGATTTTGACTCTGGTTATGTCAAGGGGTTTGCATACATGGACTTCAAAGATTCTGACAGCATGAGCAAAGCTCTAGAACTCAGTGGGAGTGAACTTGGAGGTTATGCTTTGACAGTGGATGAAGCCAAACCTAGAGATAGTCAAGGTTCTGGGAGTAGAGGAGGTCCTGCTGGAAGGCGTGGTCGCTTTAGTAGTGGAAGGGGGGATAGTGGAAGAGGTCGATTTGGTAGCGGAAGGGGGGATAGCGGAAGAGGTCGATTTGGTGGAAGGGATAGTGGCCGTAGAGGTCGAGGAATAGGTCGTACTGGATTCAACAAACCAGAAGGAACGAAGAAAACTTTTGCTGATGACTAG 1839 0.4573 MAKSSKKSATKVEDAPVVVSPAKSGKKGKRQAEEEAKAVSAKKQKLEEVKQKKEAELKKVKEESSSDESSDESEDEKPVAPAKKTPAKNGDVKKAPKPVSSSSSEESEDSSDEEASVKKPTKVEAAKVTKVVPKEESSDDSESDDDSSEDEKPAVKAVASKNVSAPAKKEASSSDDSSDEDSDEDEAPKPKAAPAAAKNGSVPAKKPAESSDSDSSESDSDDDKNKKKPATTVPKTESSDDDSSEDSSDEEDTKPTKPAATPKAAAAAKEDSSSDEDSSSDEDTETGKSNGNKKTVAAVKTQDKMEVDDDSDSSDDSEEESDEEPAKTPQKKVVKDVEMVDANKSAKKAPATPATPNQSGGSKTLFCGNLSFSVQRADIENFFGEDVVDVRLANDEDGRFKGFGHVEFATAEAAQSALELNGQELLQRAIRLDLARERGAYTPNANSNYSAQSGGRSQTIFVKGFDSNLGEDEIRSKLEEHFGSCGEVTRVSIPKDFDSGYVKGFAYMDFKDSDSMSKALELSGSELGGYALTVDEAKPRDSQGSGSRGGPAGRRGRFSSGRGDSGRGRFGSGRGDSGRGRFGGRDSGRRGRGIGRTGFNKPEGTKKTFADD* 613
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2532 612 SUPERFAMILY RNA-binding domain, RBD 355 456 IPR035979 GO:0003676
Tpr3g2532 612 SUPERFAMILY RNA-binding domain, RBD 453 569 IPR035979 GO:0003676
Tpr3g2532 612 MobiDBLite consensus disorder prediction 219 241 - -
Tpr3g2532 612 Gene3D - 352 442 IPR012677 -
Tpr3g2532 612 MobiDBLite consensus disorder prediction 1 335 - -
Tpr3g2532 612 MobiDBLite consensus disorder prediction 75 91 - -
Tpr3g2532 612 MobiDBLite consensus disorder prediction 26 66 - -
Tpr3g2532 612 MobiDBLite consensus disorder prediction 534 612 - -
Tpr3g2532 612 MobiDBLite consensus disorder prediction 308 323 - -
Tpr3g2532 612 Gene3D - 446 595 IPR012677 -
Tpr3g2532 612 PANTHER BNAA08G02930D PROTEIN 194 578 - -
Tpr3g2532 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 458 539 IPR000504 GO:0003723
Tpr3g2532 612 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 194 578 - -
Tpr3g2532 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 431 IPR000504 GO:0003723
Tpr3g2532 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 461 532 IPR000504 GO:0003723
Tpr3g2532 612 CDD RRM2_NUCLs 459 537 IPR034350 -
Tpr3g2532 612 MobiDBLite consensus disorder prediction 112 137 - -
Tpr3g2532 612 Coils Coil 29 66 - -
Tpr3g2532 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 437 IPR000504 GO:0003723
Tpr3g2532 612 SMART rrm1_1 459 535 IPR000504 GO:0003723
Tpr3g2532 612 SMART rrm1_1 364 433 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr3g2532 Tpr-Chr3 24521510 24526272 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2532 361 538 Eukaryotic Initiation Factors Gene Family AT1G22760 30.000 4.95e-10 60.5