Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2530 ATGTACTGGAGGAGAATACAGTGCAGAGATCGGAGATGGGCTTTGTTGTTGCAGCCATCAAAATACTTCCTTAGGCCAAAGACCACCGCGAAAGAATATTCTTCACACGGTGGTATTATTAGAAGAGATGTTTTAGGTTCAGGTTCATCTAGTCATGTTTCATCTGGACATAGTTTTACTGGTCTGAACAGAAGGCCTAGTTTTTGTCTTAGGAGTACTCAGATACACGCTTTTAGTTCTAAAAGTGATGGAAGTAATGCAAGTGAGAATAAACAAGTACATGTTAATGTCGGAGCTAATTTTGATAAGAATCAGATAGATAAGTCCAGGGAAGATGTTAAATGCAGCAATGCTCATGCACGACTTGGAGAACAGGATCAAGAGGAGTGGCTTAAGAATGAGAAGCTTGCTGTAGAAAGTAAAAGGAAAGAATCACCGTTTCTGACTAGAAAAGACAAGTTTAAAAATGAATTTTTGAGAAGAATTGTTCCGTGGGAGAAAATAAACATTTCATGGGATACATTTCCTTATCACATACCTGAGCATACGAAAAATCTTCTGACGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTATCTTGTTTTGGCTCTCGCCTTGCATCTTCAAGTGGAAGAATATTGCTTCAGAGCATTCCCGGCACCGAGCTCTATCGCGAGAGAGTAGTTAGAGCGCTTGCACAAGATTTACAAGTTCCATTGTTGGTGCTTGACAGCAGCATCCTTGCTCCTTATGATCTTGACGATGATCAATCATCAGACTATGAGTCGGATGATTCGGAATCTGGGGAAGAAGGTGCTCTAGAGTCAGAGAATGAGGATGATAATGATGCTAGTAATGAAGAAGAGTGGAGTAGCAGTACTGAAGCGAAGTCAGATGCAAGTGATAATGAAGATGCACTAGCATCTGCTGAAGCAGCCCTTAAGAGAGTTAAGGCCGCTGTTCAGAAACTTGTCCCTTATAATGTTGAAGAACTTGAGAAGATGGTGACTGGTGGAGATGACAGTTCTGAGTCATCGAGTTCTAATGATGCGAAGTCTTCTGATAAATCAGAAAGTCAGCTAAGAAAAGGTGACCGTGTGAAGTACACTGGGCCTTCTATTGAACTTACAGACGATGATAGGGATGTATTTTTAAATAATGGTCAGAGAGGAGAGGTATACGAGGTTAATGGAGATCGAGTTGCCGTCATCTTGGATATTAACGAAGAGAAGGCTAATGATAGTGAGGTTGAAAACCTTAACAACGATCGTAAAAAACCATCAGTTTATTGGATAAATGTTAAGGACATCGAGAATGATCGTGATGCTCAATCACAGGATTGCTATATAGCAATGGAGGCTTTATGTGAGGTTTTGAATTCCAAACAACCTCTTATAGTCTATTTTCCAGATAGTTCACAGTGGTTGCATAAATCAGTTCCTAAGTCAAGCCGGAATGAGTTCTTTAACAAGGTTGAGGAGATTTTTGACCGGTTATCTGGTCCAGTAGTATTGATTTGCGGGCAAAGCAAAGTTCAATCAGGATCAAAGGAGAAAGAAAAATTAACGATGATACTTCCAAACTTCGGACGTGTTACTAAGCTGCCTCTTTCTTTGAAGCACATGACTGATGGATTCAAAGAGGGAAAGATATCAGAAGATGATGAAATTAACAAACTCTTCTCGAATGTTTTTAGTGTACATCCACCTAAGGAGGAGAATCTACAGACAGTATTCAAAAAACAACTCGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAATCTGAATGAACTACGAAAGGTTCTTGAAGAAAATCATCTATCATGCATCGACCTCTTGCATGTGAATACCGATGGCATCATTTTAACAAAACAAAAAGCTGAAAAAGTAGTAGGCTGGGCAAAAAATCATCACTTATCATCATGCTTGCATCCTTCTATTAAAGGAGAAAAATTGTTCATACCTCGCGAAAGTCTTGAAATTGCAATCTCAAGGATGAAAGACATGGAAACTATGTCAAGAAAACCTTCTCAGAACCTCAAGAACCTTGCAAAGGATGAGTTCGAGAGCAATTTCATTTCATCGGTTGTAGCTCCTGGTGAAATAGGTGTACAGTTTGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAGGAACTTGTTATTCTTCCAATGAGAAGGCCCGAGCTTTTCTCTCACGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTCTTTGGTCCTCCTGGAACCGGGAAAACCCTTCTGGCCAAGGCACTTGCGACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACGTCAAAGTGGTTTGGAGATGCTGAGAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTAGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCGTGGGATGGATTGAGGTCAAAAGAAAATCAGAGAATCCTCATTCTTGGAGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAAAGAAGATTCTAAGAATATTTCTTGCAAAAGAAAATCTGAATTCTGATTTTCAGTATGACAAACTTGCTAACTTGACCGAAGGCTACTCTGGAAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATCGACCGGTTCAAGAGCTCTTAGAAGAAGAAAAGAAGAGAGACGATGGTACTACAACTTCAGTATTAAGGCCTCTTAATTTGGATGATTTTGTACAAGCAAAATCCAAGGTGGGTCCATCTGTTGCGTATGATGCAACAAGCATGAATGAGCTAAGGAAGTGGAATGAAATGTACGGTGAAGGCGGTAGTAGAACCAAATCACCATTTGGATTCGGGAACCGATCTTGA 3009 0.4048 MYWRRIQCRDRRWALLLQPSKYFLRPKTTAKEYSSHGGIIRRDVLGSGSSSHVSSGHSFTGLNRRPSFCLRSTQIHAFSSKSDGSNASENKQVHVNVGANFDKNQIDKSREDVKCSNAHARLGEQDQEEWLKNEKLAVESKRKESPFLTRKDKFKNEFLRRIVPWEKINISWDTFPYHIPEHTKNLLTECAASHLRHNKLSCFGSRLASSSGRILLQSIPGTELYRERVVRALAQDLQVPLLVLDSSILAPYDLDDDQSSDYESDDSESGEEGALESENEDDNDASNEEEWSSSTEAKSDASDNEDALASAEAALKRVKAAVQKLVPYNVEELEKMVTGGDDSSESSSSNDAKSSDKSESQLRKGDRVKYTGPSIELTDDDRDVFLNNGQRGEVYEVNGDRVAVILDINEEKANDSEVENLNNDRKKPSVYWINVKDIENDRDAQSQDCYIAMEALCEVLNSKQPLIVYFPDSSQWLHKSVPKSSRNEFFNKVEEIFDRLSGPVVLICGQSKVQSGSKEKEKLTMILPNFGRVTKLPLSLKHMTDGFKEGKISEDDEINKLFSNVFSVHPPKEENLQTVFKKQLEEDRKIVISRSNLNELRKVLEENHLSCIDLLHVNTDGIILTKQKAEKVVGWAKNHHLSSCLHPSIKGEKLFIPRESLEIAISRMKDMETMSRKPSQNLKNLAKDEFESNFISSVVAPGEIGVQFDDIGALEDVKKALQELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRKKILRIFLAKENLNSDFQYDKLANLTEGYSGSDLKNLCVAAAYRPVQELLEEEKKRDDGTTTSVLRPLNLDDFVQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGNRS* 1003
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2530 1002 ProSitePatterns AAA-protein family signature. 850 869 IPR003960 GO:0005524|GO:0016887
Tpr3g2530 1002 Gene3D - 879 964 - -
Tpr3g2530 1002 MobiDBLite consensus disorder prediction 356 373 - -
Tpr3g2530 1002 MobiDBLite consensus disorder prediction 291 305 - -
Tpr3g2530 1002 Gene3D - 706 982 IPR027417 -
Tpr3g2530 1002 SMART AAA_5 743 880 IPR003593 -
Tpr3g2530 1002 MobiDBLite consensus disorder prediction 340 355 - -
Tpr3g2530 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 968 IPR027417 -
Tpr3g2530 1002 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 998 - -
Tpr3g2530 1002 MobiDBLite consensus disorder prediction 254 306 - -
Tpr3g2530 1002 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 998 - -
Tpr3g2530 1002 Pfam AAA+ lid domain 900 936 IPR041569 -
Tpr3g2530 1002 Pfam ATPase family associated with various cellular activities (AAA) 747 877 IPR003959 GO:0005524|GO:0016887
Tpr3g2530 1002 MobiDBLite consensus disorder prediction 337 373 - -
Tpr3g2530 1002 CDD AAA 712 878 - -
Tpr3g2530 1002 MobiDBLite consensus disorder prediction 256 289 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr3g2530 Tpr-Chr3 24484767 24503458 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2530 706 938 Calmodulin-binding Proteins AT3G56690 38.983 4.96e-42 165
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2530 - - gmx:100812718 1562.74