Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2518 ATGGAGCACCATGGCTATAGAAACATAAATGGTATGATTCCTGGTGGTATTCTACATCAGGGTCATGGTGGAAATCAACCTAGGATGATCATGACTGCCCAAGATGCTCATGTGATAGATCACCACTTTATTTTGAATCAACATAACATCAATCCGGTTTTCGACATTGATGCTACCAGACGACGATATAATACCTCCTCCTCCTCGGCTTATGCTTATAATGTCCAGGATGGCCATTTTGTTTTTGATGAAAACAGCCATCAGGTGAACCACCAAGTTCAACCTAGGGTGAGTACTAGAAACGTCTCGTCGGCTTATGCTTATTATGTACAAGATGGGCTCTTCATTCTTGATGAAAACATCAGTCAAGTGAACCAACAAGTTCCGACAAGAAGAGACATTGGAGTTTATGCCAATCTTGAGAAAATCACAATTCAACAAGTACCAACGGATTCTGAAGCTTTGACATGTTCCATATGTCTCGTGGACTTTTCAGTTGGGTTGGAAGCCATTCGATTGCCGTGTTTGCATCTATATCACAAAGATTGTATTTTTGAGTGGTTAGATAGATCTAGCACGTGTCCAATGTGCCGTAGGCCTGTTTTGTCACTTTAG 615 0.413 MEHHGYRNINGMIPGGILHQGHGGNQPRMIMTAQDAHVIDHHFILNQHNINPVFDIDATRRRYNTSSSSAYAYNVQDGHFVFDENSHQVNHQVQPRVSTRNVSSAYAYYVQDGLFILDENISQVNQQVPTRRDIGVYANLEKITIQQVPTDSEALTCSICLVDFSVGLEAIRLPCLHLYHKDCIFEWLDRSSTCPMCRRPVLSL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2518 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 202 IPR013083 -
Tpr3g2518 204 SMART ring_2 157 197 IPR001841 -
Tpr3g2518 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 46 199 - -
Tpr3g2518 204 CDD RING-H2_PA-TM-RING 156 198 - -
Tpr3g2518 204 Pfam Ring finger domain 156 198 IPR001841 -
Tpr3g2518 204 SUPERFAMILY RING/U-box 140 202 - -
Tpr3g2518 204 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 46 199 - -
Tpr3g2518 204 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2518 Tpr-Chr3 24219789 24220662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2518 154 198 C3H Transcription Factor Family AT5G54990 48.889 1.39e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2518 - K11980 qlo:115951765 79.3369