Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2514 ATGAGTTCTCGGACCGGTAGGGTAACTGCTGTCAGAGGTTACAGCCGGCGAAGGAAGGTAGGGTTGGACCTTGACCTTAATTTACCGGCAGGTGAGATTCCGATTATTGAGAATCTGGCTGGTGAAAATCGCGAGCAAGAGGGACCTTCGATTCAGTTGGGGCTTCAAGAAGTAGAAGTTCATGCTAACCCGCAGCCCATTGTACTTGTAGAAGCTCCTATGATTGATGTGGAGGAAATTGATGATGATGTTATTGAATCTTCCCCGAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCGGGAGGACTATAGTTGATGTGGATTTAGAAGAGCAGACTAGGGTAAGCAACAATAATCGCTACAAACGCAGAAGAGAACCTCCAAATCAAACAATTATCAATTGTGATCTTTATATAAATTTGGAAGGCAGTAGCAGCTCTACGATGGAAACTGTCAAAAAGCCACCTGAGCCTCCAAAGGAACCTGTCTTCAGCTGTCCTATATGCATGGGCCCTTTGGTCGAAGAAATGTCGACAAGGTGTGGTCATATATTTTGCAAGGCTTGTATCAAGGCTGCTATAAGTGCTCAGGCTAAATGTCCTACATGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTAAATAA 675 0.4356 MSSRTGRVTAVRGYSRRRKVGLDLDLNLPAGEIPIIENLAGENREQEGPSIQLGLQEVEVHANPQPIVLVEAPMIDVEEIDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQTRVSNNNRYKRRREPPNQTIINCDLYINLEGSSSSTMETVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQAKCPTCRKKITVKELIRVFLPTTK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2514 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 223 IPR013083 -
Tpr3g2514 224 Pfam Zinc finger, C3HC4 type (RING finger) 169 206 - -
Tpr3g2514 224 ProSitePatterns Zinc finger RING-type signature. 184 193 IPR017907 -
Tpr3g2514 224 ProSiteProfiles Zinc finger RING-type profile. 169 207 IPR001841 -
Tpr3g2514 224 SUPERFAMILY RING/U-box 168 213 - -
Tpr3g2514 224 PANTHER ELFLESS, ISOFORM B 3 224 - -
Tpr3g2514 224 PANTHER RING ZINC FINGER-RELATED 3 224 - -
Tpr3g2514 224 SMART ring_2 169 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2514 Tpr-Chr3 24171283 24175237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2514 5 224 C3H Transcription Factor Family AT5G48655 48.879 1.31e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2514 K22651 - jre:109013825 265.388