Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2498 ATGGCTTCCTCTTTCGTCAAGCTTGATGATTCTCCAATGTTCCACAAACAGTTATTTTCTATTGAAGAAACAGCAGATGAGTTAAAAGATCGCTGCCAGAATTTATTCAAAGGATGTAAGAAGTTTATGACAGCTTTAGGGGAAGGATATAATGGAGAACTTGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCCAAGACGATCCTGTTAGTGTATCAATTGGAGGACCCGTCATATCTAAGTTTATCACCGCATTACGTGAATTAGCTACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATAGACCGGCTGACAGAGTTTATAAATGTTGATTTGCAAGATGCAAAGGAATCTCGCCGCCGTTTTGACAAATCTGTGCATGCTTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACACCGGAAGACATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCAAAGTCATCCTTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCCATAAGTGCAATAATGGATGCTCATATGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTACATTCACCAGGTGCTAACATATGCTCAACAATCTAAAGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGGCAGAGCTGGACAATACTGAACCCGTGCTAGGTGCTGATGGCACCAATCCTGTAGGCCTGCATTCTTTCAAAAGCATTGAGGCAGGGGTGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGACGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTGACAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAGGCCATGGGATTTCAGCCATATCATTATAGTCGTGTTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAATAGGGCTACATCACTAAATGAGAATATTTTGGGTTGTTGTGCAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTTCGTATTATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTACACAAAATTACTGGAGCTATCACTTCACTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGATAAATTGCAATTAGAAAATAAAAACTCAGCAGCAACTGGTTCTTCTTTGACAAGTGAACAAGAGGATAGTAATAAATCTTTGATGGATGGTGTATTTTCCAAAGAAGCGGGCAGTGTCTCTCAAATTTTAAGGAGAATTCCTGGGAATGATAAGTGTGCCGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTTCTGTGTATTGAATGCTCTGGAGTGCATCGCAATTTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTGAGGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTAGGTAATACTTATTGTAATTCTATTTGGGAGGGCTTGCTTCTACTTGGCGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGCTCCACAGATCCCTCCCAACATAAAGAAAAGTACATCCAAGCAAAGTATGTAGAAAAATCACTAGTCATCCGTGAAGAGGATACACCTGAAAATCCTTCAGTTTCCACAAAAATCTGGCAAGCAGTTCAAGATATAAATGTACGAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCAATAAACACAAACTATGATGATGTGGTTCCCCATGCCGATACTGAAGGAAATCAGCATGATCCTGAAGCCTGTCTGAGGAATAAAGAGACTAATGAAAGAGAGAGTTGTTTCCGTGGTTGGTCTATATTACATCTGGCATGTCATTCTGATAGTACACTAATGGTTGAGTTATTGCTCCAATTTGGTGCTGATATAAACATGCGTGACTATCATGGAAGGACTCCCTTGCACCATTGCATTTCTAGTGGGAAAAATCCATTGGCAAAGTTTTTACTAAGAAGGGGCGCAAAACCGTCAATTAAAGATGCTGCTGGACATACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAACAGTTATTTATTATGCTTGTTGAACACCAGTAA 2307 0.3971 MASSFVKLDDSPMFHKQLFSIEETADELKDRCQNLFKGCKKFMTALGEGYNGELAFADSLEAFGGGQDDPVSVSIGGPVISKFITALRELATFKELLRSQVEHVLIDRLTEFINVDLQDAKESRRRFDKSVHAYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHMRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELDNTEPVLGADGTNPVGLHSFKSIEAGVQSATKGEIQTVKQGYLLKRSSRTRGDWKRRFFVLDNHGSLYYYRSKGPKAMGFQPYHYSRVSEQNSGMFGRFRSRHNRATSLNENILGCCAVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVHKITGAITSLFNFQFLQQPHYDKLQLENKNSAATGSSLTSEQEDSNKSLMDGVFSKEAGSVSQILRRIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNFGVHISKVRSITLDVRVWEPTILELFNNLGNTYCNSIWEGLLLLGDERVGESNVPLKPCSTDPSQHKEKYIQAKYVEKSLVIREEDTPENPSVSTKIWQAVQDINVREVYRLIVTSTSNPINTNYDDVVPHADTEGNQHDPEACLRNKETNERESCFRGWSILHLACHSDSTLMVELLLQFGADINMRDYHGRTPLHHCISSGKNPLAKFLLRRGAKPSIKDAAGHTALERAMEMGAITDEQLFIMLVEHQ* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2498 768 ProSiteProfiles Ankyrin repeat region circular profile. 708 739 - -
Tpr3g2498 768 PANTHER CENTAURIN/ARF 3 764 IPR045258 GO:0005096
Tpr3g2498 768 Gene3D - 281 432 IPR011993 -
Tpr3g2498 768 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Tpr3g2498 768 CDD PH_ACAP 291 426 - -
Tpr3g2498 768 SUPERFAMILY Ankyrin repeat 654 754 IPR036770 -
Tpr3g2498 768 SUPERFAMILY ArfGap/RecO-like zinc finger 476 598 IPR037278 -
Tpr3g2498 768 Gene3D Arf GTPase activating protein 454 605 IPR038508 -
Tpr3g2498 768 Pfam BAR domain of APPL family 8 230 - -
Tpr3g2498 768 ProSiteProfiles Ankyrin repeat profile. 675 707 IPR002110 GO:0005515
Tpr3g2498 768 SMART ANK_2a 708 737 IPR002110 GO:0005515
Tpr3g2498 768 SMART ANK_2a 675 704 IPR002110 GO:0005515
Tpr3g2498 768 Gene3D - 608 760 IPR036770 -
Tpr3g2498 768 Pfam Putative GTPase activating protein for Arf 476 598 IPR001164 GO:0005096
Tpr3g2498 768 CDD BAR_SFC_plant 16 217 IPR035670 -
Tpr3g2498 768 SMART PH_update 289 424 IPR001849 -
Tpr3g2498 768 CDD ArfGap 477 592 - -
Tpr3g2498 768 SMART arf_gap_3 473 605 IPR001164 GO:0005096
Tpr3g2498 768 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Tpr3g2498 768 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Tpr3g2498 768 ProSiteProfiles Ankyrin repeat region circular profile. 675 706 - -
Tpr3g2498 768 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 764 - -
Tpr3g2498 768 SUPERFAMILY BAR/IMD domain-like 8 311 IPR027267 -
Tpr3g2498 768 ProSiteProfiles ARF GTPase-activating proteins domain profile. 473 605 IPR001164 GO:0005096
Tpr3g2498 768 Coils Coil 229 249 - -
Tpr3g2498 768 SUPERFAMILY PH domain-like 288 437 - -
Tpr3g2498 768 Pfam Ankyrin repeats (3 copies) 668 739 IPR002110 GO:0005515
Tpr3g2498 768 Pfam PH domain 290 421 IPR001849 -
Tpr3g2498 768 PRINTS HIV Rev interacting protein signature 485 504 IPR001164 GO:0005096
Tpr3g2498 768 PRINTS HIV Rev interacting protein signature 504 521 IPR001164 GO:0005096
Tpr3g2498 768 PRINTS HIV Rev interacting protein signature 527 548 IPR001164 GO:0005096
Tpr3g2498 768 ProSiteProfiles PH domain profile. 288 422 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2498 Tpr-Chr3 23973954 23984791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2498 479 592 C2H2 Transcription Factor Family AT3G07940 41.739 1.64e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2498 K12489 - gmx:100796006 1273.46