Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2484 ATGGTACAACAGTTAGATGAACGGAGAGAATTTCATGAAGCGAGAGAATTTTATCAAGCAATTTCTCGGAATAATACATGGTCTACGAGGCAACATTACACACCCGATTCACAAATCAATATGTCTTTTGGCACAATTGCAGAGATCGCAAGATGGGCTATGAGAGCGTTGCCGCCGGTTAAAAGTTTTAATGGTGGTGCCGGAAATATGGATTGTCCTATTTGTATAGAACAATTTGCGAAAGGAGAATTGATTCAATCTTTTGGACTGTGTGGACATGATTTTCATACCTCGTGTCTCAATTCTTGGTTACTCGGAGGAAAAACTACTTGTCCAGTTTGTCGCCTAGATTTGTCCAATCAACCACATAGAGTTTAA 378 0.3968 MVQQLDERREFHEAREFYQAISRNNTWSTRQHYTPDSQINMSFGTIAEIARWAMRALPPVKSFNGGAGNMDCPICIEQFAKGELIQSFGLCGHDFHTSCLNSWLLGGKTTCPVCRLDLSNQPHRV* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2484 125 SMART ring_2 72 114 IPR001841 -
Tpr3g2484 125 SUPERFAMILY RING/U-box 71 121 - -
Tpr3g2484 125 PANTHER OS06G0666500 PROTEIN 31 118 - -
Tpr3g2484 125 ProSiteProfiles Zinc finger RING-type profile. 72 115 IPR001841 -
Tpr3g2484 125 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 31 118 - -
Tpr3g2484 125 CDD RING-H2 72 115 - -
Tpr3g2484 125 Pfam Ring finger domain 71 115 IPR001841 -
Tpr3g2484 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 123 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2484 53 121 C3H Transcription Factor Family AT2G27940 42.254 3.30e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2484 - K10664 mtr:MTR_4g073810 163.696