Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2482 ATGGCGAAATTAACAGGGAAGGTGAAGTGGTTCAACGATCAGAAGGGGTTTGGTTTCATCACCCCTGATGATGGTTCTGAGGAGCTTTTCGTTCATCAATCTCAGATCCAGACTGACGGTTTCCGTAGCCTAGCTGAAGGAGAGTCTGTTGAGTATCAGATCGAATCTGATAACGACGGACGATCTAAGGCTGTTAATGTTACTGGACCTGATGGTGCTAATGTTCAAGGAACCAGACGCGGTGGTGGCGGCGGCGGAGGTTATGAGCGTGGTGGAGGTGGTTATGGGGGTGGAGGAAGCTATGGTGGCGGTGGATATGGTGGTGGAGGCGGTTATGGTGGTGGACGTGGTGGAGGAGGATATGGTGGTGGCGGAGGAGGCTATGGTGGTGGTGGACGTGGAGGAGGACGTGGTGGAGGCGGCGGTGGCTGCTATAACTGTGGTGAATCTGGACACATGGCTAGGGATTGCAGCAGTGGTGGAAGCGGTGGTGGAGGTGGTGGCAGGTACGGTGGTGGCGGTGGCGGCGGTGGCGGTGGAAGCTGCTACAGCTGTGGAGAGTCTGGTCACTTTGCCAGAGATTGCCCAACAAGTGCTCGTTAG 603 0.5589 MAKLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGESVEYQIESDNDGRSKAVNVTGPDGANVQGTRRGGGGGGGYERGGGGYGGGGSYGGGGYGGGGGYGGGRGGGGYGGGGGGYGGGGRGGGRGGGGGGCYNCGESGHMARDCSSGGSGGGGGGRYGGGGGGGGGGSCYSCGESGHFARDCPTSAR* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2482 200 Pfam 'Cold-shock' DNA-binding domain 5 69 IPR002059 GO:0003676
Tpr3g2482 200 SMART csp_8 5 70 IPR011129 GO:0003676
Tpr3g2482 200 MobiDBLite consensus disorder prediction 156 177 - -
Tpr3g2482 200 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
Tpr3g2482 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Tpr3g2482 200 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Tpr3g2482 200 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Tpr3g2482 200 Gene3D - 177 200 - -
Tpr3g2482 200 Gene3D - 133 166 - -
Tpr3g2482 200 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
Tpr3g2482 200 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Tpr3g2482 200 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Tpr3g2482 200 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Tpr3g2482 200 MobiDBLite consensus disorder prediction 55 86 - -
Tpr3g2482 200 SUPERFAMILY Retrovirus zinc finger-like domains 136 198 IPR036875 GO:0003676|GO:0008270
Tpr3g2482 200 Gene3D - 1 81 IPR012340 -
Tpr3g2482 200 MobiDBLite consensus disorder prediction 59 73 - -
Tpr3g2482 200 ProSiteProfiles Zinc finger CCHC-type profile. 144 157 IPR001878 GO:0003676|GO:0008270
Tpr3g2482 200 PANTHER COLD SHOCK PROTEIN 2 3 115 - -
Tpr3g2482 200 PANTHER COLD SHOCK PROTEIN 2 114 200 - -
Tpr3g2482 200 Pfam Zinc knuckle 181 196 IPR001878 GO:0003676|GO:0008270
Tpr3g2482 200 Pfam Zinc knuckle 143 158 IPR001878 GO:0003676|GO:0008270
Tpr3g2482 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 114 200 - -
Tpr3g2482 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 115 - -
Tpr3g2482 200 CDD CSP_CDS 5 69 IPR002059 GO:0003676
Tpr3g2482 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 196 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2482 Tpr-Chr3 23804889 23805852 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Tpr3g2482 CSD 4.1e-28 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2482 - - cam:101490833 194.126