LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g2470	ATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACGCTTCACTTGGTCCTAAGGCTCAGGGGAGGAACCATGATTAAAGTGAAGACTTTAACTGGAAAAGAGATTGAAATTGACATTGAGCCAACTGATACAATTGATCGTATCAAGGAACGTGTTGAAGAAAAGGAGGGAATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGTAAGCAGCTTGCTGATGATAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCCGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAA	462	0.4545	MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN*	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g2470	153	ProSiteProfiles	Ubiquitin domain profile.	77	152	IPR000626	GO:0005515
	Tpr3g2470	153	ProSiteProfiles	Ubiquitin domain profile.	1	76	IPR000626	GO:0005515
	Tpr3g2470	153	ProSitePatterns	Ubiquitin domain signature.	27	52	IPR019954	-
	Tpr3g2470	153	SUPERFAMILY	Ubiquitin-like	1	76	IPR029071	-
	Tpr3g2470	153	PANTHER	UBIQUITIN	1	152	-	-
	Tpr3g2470	153	ProSitePatterns	Ubiquitin domain signature.	103	128	IPR019954	-
	Tpr3g2470	153	PANTHER	-	1	152	-	-
	Tpr3g2470	153	Pfam	Ubiquitin family	79	150	IPR000626	GO:0005515
	Tpr3g2470	153	Pfam	Ubiquitin family	3	74	IPR000626	GO:0005515
	Tpr3g2470	153	PRINTS	Ubiquitin signature	11	31	IPR019956	-
	Tpr3g2470	153	PRINTS	Ubiquitin signature	32	52	IPR019956	-
	Tpr3g2470	153	PRINTS	Ubiquitin signature	53	74	IPR019956	-
	Tpr3g2470	153	CDD	Ubl_NEDD8	79	152	IPR038738	-
	Tpr3g2470	153	CDD	Ubl_ubiquitin	1	76	-	-
	Tpr3g2470	153	SMART	ubq_7	77	148	IPR000626	GO:0005515
	Tpr3g2470	153	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Tpr3g2470	153	SUPERFAMILY	Ubiquitin-like	78	152	IPR029071	-
	Tpr3g2470	153	Gene3D	-	78	153	-	-
	Tpr3g2470	153	Gene3D	-	1	77	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g2470	Tpr-Chr3	23635041	23638300	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g2470	1	76	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	100.000	2.11e-50	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g2470	K12158		-	zju:107403728	289.656