Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2465 ATGGGAAGATCACCTTGTTGTGAAAAAGCTCATACAAACAAAGGAGCATGGACAAAAGAAGAAGATGATAGACTAATATCTTATATTAGAGCTCATGGTGAAGGTTGTTGGAGATCTCTTCCTAAAGCTGCTGGTTTACTCCGTTGCGGTAAAAGTTGTCGTCTCCGTTGGATTAATTATCTCCGACCAGACCTTAAACGTGGTAACTTTACTGAAGAAGAAGATGAACTCATCATCAAACTTCATAGTCTTCTTGGTAACAAATGGTCTTTGATTGCTGGAAGATTACCAGGTAGAACTGATAATGAGATTAAGAATTATTGGAACACTCATATCAGAAGAAAACTTCTTAACAGAGGAATTGACCCTGCAACTCATAGACCTCTAAATGAACCTCCTCATTCTTCTCATTCTCATTCTCAATCTCAATCTCAATCACTTAATCTTCAGAATCATAATCAGAATCAAGAATCTGTTACTATAGCAGTAGTAGCTGCATCTGCAACAACTACTACTACTACTATTCCTGCAGTAACAGTACCAACAACAACAATATCATTTGCTTCATCTATTAAACAAGAACAATATCATCATCATCATCATCATTATAATCATAATCAAGAGATGATGATTAAAGGTTCAGTGTTAGAAAGATGTCCTGATTTGAATCTTGAGTTAACAATTAGTCCACCAAGACAACAAGAACAAGATGAACAATTCAAAAACAGCAGAAACCTCTGTTTTGTTTGTAGTTTGGGTTTACAGAACAGTAAAGATTGTAGCTGTGATGAAATTGTTGGAAATTCTAGCACTGGAAATGCTTCTACTACTCCTGCTTATGATTTCTTAGGTTTGAAAGCTGGTGTTTGGGATTACAAAGGTTTAGAAATGAAATGA 897 0.3545 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPPHSSHSHSQSQSQSLNLQNHNQNQESVTIAVVAASATTTTTTIPAVTVPTTTISFASSIKQEQYHHHHHHYNHNQEMMIKGSVLERCPDLNLELTISPPRQQEQDEQFKNSRNLCFVCSLGLQNSKDCSCDEIVGNSSTGNASTTPAYDFLGLKAGVWDYKGLEMK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2465 298 Gene3D - 68 160 - -
Tpr3g2465 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr3g2465 298 Gene3D - 14 66 - -
Tpr3g2465 298 CDD SANT 69 112 IPR001005 -
Tpr3g2465 298 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Tpr3g2465 298 CDD SANT 16 61 IPR001005 -
Tpr3g2465 298 MobiDBLite consensus disorder prediction 134 154 - -
Tpr3g2465 298 SMART sant 66 114 IPR001005 -
Tpr3g2465 298 SMART sant 13 63 IPR001005 -
Tpr3g2465 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr3g2465 298 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 268 - -
Tpr3g2465 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr3g2465 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr3g2465 298 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tpr3g2465 298 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 268 - -
Tpr3g2465 298 MobiDBLite consensus disorder prediction 130 154 - -
Tpr3g2465 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2465 Tpr-Chr3 23570514 23571883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2465 1 298 MYB Transcription Factor Family AT4G38620 54.286 4.32e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g2465 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2465 K09422 - gmx:780553 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2465 3 23570514 23571883 Tpr3g2465 3 23570514 23571883 ECH