Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2440 ATGGGTTTCCGTTTAAATGTTATTCGACGGGCATCATTAACTGCCAACCAAACAGCATCAAAATCTGCAGAAGTGAGAAAGGGCTATGTTGCAGTGTATGTTGGAGAGAAACAGAAGCGGTTTGTGATCCCAATATCATATTTGAACCAACCATCATTTCAAGACTTATTGAGTCAAGCTGAAGAACAGTTTGGATATGATCATCCCATGGGTGGCCTCACCATTCCTTGTCCTGAAGATGACTTTCAACACATAACTTCTCACTTGAATGGGCTATGA 279 0.4122 MGFRLNVIRRASLTANQTASKSAEVRKGYVAVYVGEKQKRFVIPISYLNQPSFQDLLSQAEEQFGYDHPMGGLTIPCPEDDFQHITSHLNGL* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2440 92 Pfam Auxin responsive protein 12 88 IPR003676 GO:0009733
Tpr3g2440 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 90 IPR003676 GO:0009733
Tpr3g2440 92 PANTHER AUXIN-INDUCED PROTEIN 6B 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2440 Tpr-Chr3 23305219 23305947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2440 14 85 Calmodulin-binding Proteins AT3G43120 44.444 3.08e-17 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2440 K14488 - gmx:100816803 158.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2440 3 23305219 23305947 Tpr3g2440 3 23305219 23305947 ECH