Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2438 ATGGCTATTCGTTTACCATTGATCAAGCAAGCGAAGAAGCATATCCTTTGCCGCACACTTTCGAAATGCAAAAAAGTGTTAGTTAATAATAATATACCAAAAGGGTATTTGGCAGTATATGTTGGAGAAGAAGAAAAGAAGAGATTTGTGGTTCCAATATCATATTTGCATGAACCTGTTTTTCAGCAATTTCTTTGTAAAGCTGAGGAAGAATTTGGATTTAATCATCCAATGGGTGGCCTCACTATTCCTTGCAGAGAAGATGTTTTTGTTACAGTAACTTCTCAACTGGAAACTTAA 300 0.3533 MAIRLPLIKQAKKHILCRTLSKCKKVLVNNNIPKGYLAVYVGEEEKKRFVVPISYLHEPVFQQFLCKAEEEFGFNHPMGGLTIPCREDVFVTVTSQLET* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2438 99 PANTHER SMALL AUXIN-UP RNA-RELATED 24 98 - -
Tpr3g2438 99 Pfam Auxin responsive protein 19 95 IPR003676 GO:0009733
Tpr3g2438 99 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 24 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2438 Tpr-Chr3 23280986 23281605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2438 31 90 Calmodulin-binding Proteins AT3G43120 53.333 2.91e-16 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2438 K14488 - qsu:112040181 127.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2438 3 23280986 23281605 Tpr3g2438 3 23280986 23281605 ECH