Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2360 ATGGCGTGTCATTGTTTATGGTATTGGAGGAACAAAGAGCAACATGAAGAAGAGTTTCATAGACCAATGCATCCAGCTCAACATGTTATGAGGCGTATGTTTGATTATCATGCTGCTGCAAAAGCAAATATTGTGGTCGGGATGGTGAATGATGTTTTGGCTAACATTGATTGCTCTTTGGAGGGGACACTGTTGTTTATGGGTCGTGTCCAGTTCAAAGAAGAGATGTCTGCAACACAATTAACAGAAGAAGTATTACAGGGTTCAAAGTGTGAAGAGTGTGGAAACCAAGCAAAGAAGGATTGTGCATACTCAAGATGCAGAAATTGTTGCAAGAACAAAGGCTTTAACTGCCAAACACATATCAGAAGCACTTGGATTCCTGCTGATAGAAGAAGGCGCCACCGAATGGACCAACCTCCTAATCAGCAGCACCAACTTCATGAACATAAAAAGCACAAGCAGATCAACCCTTTTTCAAGTTTTGAGGAGTTTAAATTTCCAGCTGTTGTGAATTCCATGGCGACATTGACCTGTGTTCAGATGCGCTCTATGGATGACAGGGTTAACGAAATGGCCTATCAAACAAGTGTAGAAATTGGAGGACATGTATTTAATGGTATTCTTTATGATCAAGGCCTTGATCAACCAAGGTTCAATAATAATACTAGGGGTGACTACTCCATTGACAATATTCATCAGCAACAAAATCTCAATCATTTTTATGATGGTGCAACTGCTTCTCATCATCACCTTTTATACCCTCCACCGCATCCATTACCTTCCTTCAGGCCTAATATGCCATATTAG 810 0.4062 MACHCLWYWRNKEQHEEEFHRPMHPAQHVMRRMFDYHAAAKANIVVGMVNDVLANIDCSLEGTLLFMGRVQFKEEMSATQLTEEVLQGSKCEECGNQAKKDCAYSRCRNCCKNKGFNCQTHIRSTWIPADRRRRHRMDQPPNQQHQLHEHKKHKQINPFSSFEEFKFPAVVNSMATLTCVQMRSMDDRVNEMAYQTSVEIGGHVFNGILYDQGLDQPRFNNNTRGDYSIDNIHQQQNLNHFYDGATASHHHLLYPPPHPLPSFRPNMPY* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2360 269 MobiDBLite consensus disorder prediction 129 152 - -
Tpr3g2360 269 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 80 263 IPR007818 GO:0003700|GO:0006355
Tpr3g2360 269 PANTHER BNAC01G23660D PROTEIN 80 263 - -
Tpr3g2360 269 Pfam Domain of unknown function (DUF702) 88 215 - -
Tpr3g2360 269 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 90 132 IPR006510 -
Tpr3g2360 269 MobiDBLite consensus disorder prediction 131 146 - -
Tpr3g2360 269 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 166 214 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2360 Tpr-Chr3 22379930 22382092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2360 85 261 C2H2 Transcription Factor Family AT2G21400 40.217 1.53e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tpr3g2360 DUF702 3.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2360 - - mtr:MTR_4g071110 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2360 3 22379930 22382092 Tpr3g2360 3 22379930 22382092 ECH
Tpr1g3826 1 42265885 42268619 Tpr3g2360 3 22379930 22382092 ECH
Tpr7g0263 7 2170400 2172568 Tpr3g2360 3 22379930 22382092 ECH