Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2344 ATGGCAAACACACCTAGTATTCCATCTCATACAAAAGCTTGGGTTTATTCTCAATATGGTAACATAGAAGAAAATCTAAAGTTTGATACTAATGTACCTATACCACACCCTAAGGAAGATCAAGTTCTTATAAAGGTTGTGGCTGCTGCCCTTAATCCTGTTGATATTAAAAGGGCTCTTGGTCATTTCAAGGACATTGACTCTCCTTTGCCAACTGTACCAGGATATGATGTTTCTGGAGTGGTGGTTAGTGTGGGAGATCAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATCAATGAGATCACTTTAGACCATCCAAAAATTGTTGGTTCTGTGGCAGAGTATACTGTTGCTGAAGAAAAAGTACTTGCTCACAAACCATCAAATTTCAGCTTTGTTCAAGCTGCTAGCCTCCCTTTAGCAATAATTACGGCTTATCAAGGACTTGAAAGAATTGAGTTTTCTTCCGGTAAATCTATACTTGTTCTTGGAGGTGCCGGCGGAGTTGGATCTCTTGTTATTCAGCTAGCCAAGCATGTTTTTGAGGCATCAAGAATTGCAGCTACTGCCAGTACTACAAAACTTGAATTTTTGAAGAAGTTGGGAGCAGATTTGGCAATTGATTATACTAAGGAGAATTATGAACAACTTTCAGAAAAATTTGATGTAGTGTATGATGCAGTAGGTGATAGTGAGAGGGCAGTGAAGGCTGTTAAAGAAGGGGGGAAAGTTGTGACAATACTGCCACCCGGAACACCGCCGGCTATCCCTTTCTTACTGACTTCAGATGGAGATGTGTTAGAGAAATTGAAACCTTACTTGGAGAGTGGAAAAGTGAAGCCAATATTGGACCCTAAGAGTCCTTTTCCATTTTCTGAGACTGTGGAAGCATATTCATATCTTAATACTAATAGAGCTGTTGGGAAAATAGTTATACATCCCATTCCATGA 963 0.3936 MANTPSIPSHTKAWVYSQYGNIEENLKFDTNVPIPHPKEDQVLIKVVAAALNPVDIKRALGHFKDIDSPLPTVPGYDVSGVVVSVGDQVKKFKVGDEVYGDINEITLDHPKIVGSVAEYTVAEEKVLAHKPSNFSFVQAASLPLAIITAYQGLERIEFSSGKSILVLGGAGGVGSLVIQLAKHVFEASRIAATASTTKLEFLKKLGADLAIDYTKENYEQLSEKFDVVYDAVGDSERAVKAVKEGGKVVTILPPGTPPAIPFLLTSDGDVLEKLKPYLESGKVKPILDPKSPFPFSETVEAYSYLNTNRAVGKIVIHPIP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2344 320 SMART PKS_ER_names_mod 20 316 IPR020843 GO:0016491
Tpr3g2344 320 Pfam Zinc-binding dehydrogenase 205 316 - -
Tpr3g2344 320 Gene3D - 153 267 - -
Tpr3g2344 320 CDD MDR_like_2 12 316 - -
Tpr3g2344 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 260 IPR036291 -
Tpr3g2344 320 Gene3D - 18 316 - -
Tpr3g2344 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 320 IPR044626 GO:0016628
Tpr3g2344 320 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Tpr3g2344 320 SUPERFAMILY GroES-like 8 168 IPR011032 -
Tpr3g2344 320 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 320 - -
Tpr3g2344 320 Pfam Alcohol dehydrogenase GroES-like domain 40 101 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2344 Tpr-Chr3 22231374 22233579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2344 67 234 Monolignol Biosynthesis Gene Families AT1G72680 27.411 2.37e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2344 K18980 - gmx:100791274 480.715