Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2330 ATGGCTGACGTCAACCGCTCCAACAAACCTGAGTGGCTTCAACAGTACGATCTCATCGGTAAGATCGGTGAAGGAACCTACGGTCTCGTTTTCCTTGCTCGGATCAAATCCGCCATAAACCGCGGCAAATCCATCGCCATCAAGAAATTCAAACAATCTAAAGACGGAGATGGCGTTTCCCCCACCGTCATCCGTGAAATCATGTTGCTGAGAGAGATAACTCATGAAAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCGGACATGTCTCTGTATTTGGCCTTTGATTATGCTGAACATGACCTTTATGAAATAATAAGACATCATAGAGACAAGGTCAACCAATCAATTAATCAGTACACTGTTAAGTCGATACTGTGGCAGTTGCTCAATGGGCTGAACTATCTGCACAGCAATTGGATAATACATCGAGATTTGAAGCCATCGAATATATTGGTTATGGGCGATGAGGAGGAACACGGGGTTGTTAAAGTTGCTGACTTTGGGCTTTCAAGGATATATCAAGCCCCTCTGAAGCCATTATCTGAAAATGGGTGTTTGTTTGCCACAGAGACCTTCAGTATTGGTTTGAACATGCCTGCAAAAACTGTAGTTTTTACAAATGTCCGAAAATTTGATGGGGACAAGTTTAGGTGGATAACCAGTGGAGAATATATACAAATGAGTGGTCATGCTGGTCGACGAGGTATTGATGACCGGGGAGTATGTATCCTCATGATTGATGAGAAGATGGAGCCTTCTACTGCTAAATCAATGGTTAAAGGAGCAGCTGATAGTTTAAACAGGTAA 816 0.4252 MADVNRSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSAINRGKSIAIKKFKQSKDGDGVSPTVIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSILWQLLNGLNYLHSNWIIHRDLKPSNILVMGDEEEHGVVKVADFGLSRIYQAPLKPLSENGCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGHAGRRGIDDRGVCILMIDEKMEPSTAKSMVKGAADSLNR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2330 271 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g2330 271 Pfam Protein kinase domain 16 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g2330 271 PANTHER CYCLIN-DEPENDENT KINASE E-1 5 189 - -
Tpr3g2330 271 Gene3D Transferase(Phosphotransferase) domain 1 115 182 - -
Tpr3g2330 271 PANTHER CELL DIVISION PROTEIN KINASE 5 189 - -
Tpr3g2330 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 256 IPR027417 -
Tpr3g2330 271 Gene3D - 183 270 IPR027417 -
Tpr3g2330 271 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Tpr3g2330 271 Gene3D Phosphorylase Kinase; domain 1 8 114 - -
Tpr3g2330 271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Tpr3g2330 271 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 118 271 IPR001650 -
Tpr3g2330 271 CDD SF2_C_Ski2 188 250 - -
Tpr3g2330 271 SUPERFAMILY Protein kinase-like (PK-like) 11 178 IPR011009 -
Tpr3g2330 271 SMART serkin_6 16 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2330 Tpr-Chr3 22095356 22098521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2330 9 189 Core Cell Cycle Gene Families AT5G63610 85.635 2.47e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Tpr3g2330 Pkinase 4.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2330 K02208 - gmx:100813433 350.903