Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2312 ATGTTACACTGTCTCAACACTTCGAGTAATCTAGTCGGAGGAGGAAACATTTCCGACATGACAGTGTTGGAAAGACAAAGAGCAAGAATCAAGTTTCAAAATGAACCCCAACAGTTTTCTGGAAATGGTTTCTCTTCTTCACACCAACAACAATTTATGATGCTTGGTTGCGATTCCGCTCTCGGCGAAATCGTAACTAATTCAATGAAACCTGACCCGGATTATGAAAACGGGTTTGATGAAGAAACCGTTAAGAAAAGGAAAACAGATAATAAGGTTGATTTGAATTCTAAAGACAAGAGGATCAAAGTTTGTGTAGAAGAAGGTGAATCCAAAATCATAGAGCAAAGAAAAGGACAGAAGAATACAAAGTTCAACAATGGAAACAAAAATAAGAGAGAAAATTGTGAAGATAGTAATTCCAAGGAAAATTCGAAAGGGTCTGAAATTCAAAATCAGAAGCCTGATTACATTCATGTTCGTGCACGTCGTGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATAAGTGAGAGGATGAAATATTTGCAAGATTTAGTGCCAGGATGTAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCGATGAAATTAGCGGCTGTAAACCCAAGACTTGACTTCAACATCGATGAATTGTTTGCCAAAGAGGTGTTTACTCAAAATTTTCCAACCACAGGGATCCCATCAGAAATGACTAACCCTGCATATCTTCAATTCAATTCAGCACAACAATTAGTTTCATGTTGTGGCGGATTAATAAACAATATGGGGATAATCCCTCCGGAAATCGGACTTTGTAGGAACATTAATGCACCAACATCCGCATCTTTACCCGAAATCTTTCTCGACTCATCAGTTTTCACTCATATCCTACCCTCCTCAACTTGGGAAGGTAATTTTCAAAATCTTCACAATGTGGATTTTGATCAAGCAAGATCAATATCCTTTCCTTCTCAGCCATTCACAGGTATGGTTGAAGCTAGCAATATGAAGATGGAGATGTAA 1092 0.38 MLHCLNTSSNLVGGGNISDMTVLERQRARIKFQNEPQQFSGNGFSSSHQQQFMMLGCDSALGEIVTNSMKPDPDYENGFDEETVKKRKTDNKVDLNSKDKRIKVCVEEGESKIIEQRKGQKNTKFNNGNKNKRENCEDSNSKENSKGSEIQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFTQNFPTTGIPSEMTNPAYLQFNSAQQLVSCCGGLINNMGIIPPEIGLCRNINAPTSASLPEIFLDSSVFTHILPSSTWEGNFQNLHNVDFDQARSISFPSQPFTGMVEASNMKMEM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2312 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Tpr3g2312 363 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 81 343 - -
Tpr3g2312 363 MobiDBLite consensus disorder prediction 117 156 - -
Tpr3g2312 363 CDD bHLH_AtBPE_like 156 241 - -
Tpr3g2312 363 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Tpr3g2312 363 Gene3D - 163 237 IPR036638 GO:0046983
Tpr3g2312 363 SMART finulus 172 222 IPR011598 GO:0046983
Tpr3g2312 363 MobiDBLite consensus disorder prediction 127 144 - -
Tpr3g2312 363 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 343 IPR024097 GO:0006355
Tpr3g2312 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 235 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2312 Tpr-Chr3 21924801 21928056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2312 12 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 46.254 3.80e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g2312 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2312 - - gmx:100794256 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2312 3 21924801 21928056 Tpr3g2312 3 21924801 21928056 ECH
Tpr3g2312 3 21924801 21928056 Tpr2g0961 2 11574644 11577184 ECH