Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2309 ATGTCTTCTGCAGATGTTGAATACCGGTGCTTCGTCGGAGGTCTTGCATGGGCCACCGACAGCGACGCTCTTGAGAAAGCCTTCTCTTCCTATGGCGAGATCATTGATTCGAAGATCATTAACGATCGTGAGACTGGAAGGTCAAGAGGATTTGGATTTGTGACTTTTGCTGATGAGAAATCAATGAGAGATGCTATTGAAGGAATGAACGGTCAGAACATGGATGGACGTAACATTACTGTTAACGAGGCACAAAACAGATCCAGTGGTGGAGGAGGTGGTGGTGGTGGGTATGGTGGTGGTCGTCGTGAAGGTGGATACAATAGAAGTAGTGGTGGAGGTGGAGGATATGGTGGAGGAGGTGGTGGTGGTTATGGTGGTGGTGGTAGGGACCGTGGTTATGGTGATGACGGTGGTTCCCGTTATTCTCGTGGTGGTGGTGGTAACTGGAGGGAGTAG 459 0.4989 MSSADVEYRCFVGGLAWATDSDALEKAFSSYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQNMDGRNITVNEAQNRSSGGGGGGGGYGGGRREGGYNRSSGGGGGYGGGGGGGYGGGGRDRGYGDDGGSRYSRGGGGNWRE* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2309 152 PANTHER GEO13361P1-RELATED 1 148 - -
Tpr3g2309 152 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 148 - -
Tpr3g2309 152 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Tpr3g2309 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Tpr3g2309 152 MobiDBLite consensus disorder prediction 69 117 - -
Tpr3g2309 152 MobiDBLite consensus disorder prediction 73 89 - -
Tpr3g2309 152 Gene3D - 2 119 IPR012677 -
Tpr3g2309 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Tpr3g2309 152 SMART rrm1_1 9 82 IPR000504 GO:0003723
Tpr3g2309 152 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2309 Tpr-Chr3 21859784 21860792 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2309 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 7.12e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2309 - K13195 ccaj:109800369 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2309 3 21859784 21860792 Tpr3g2309 3 21859784 21860792 ECH