Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2308 ATGGCCTCTTCTGATGTTGAATACCGATGCTTCGTCGGCGGTCTTGCCTGGGCCACTGACAGCGACGCCCTTGCCAAAGCCTTTTCGTCCTACGGCGAAATCACTGATTCCAAGGTTATTAATGATCGTGAAAGTGGAAGATCAAGAGGATTTGGATTTGTGACTTTTGCTACCGAGAAATCGATGAGAGATGCAATTGAAGGGATGAACGGTCAAGATATTGATGGCCGTAATATTACTGTGAATGAAGCTCAGTCCCGTAGTAGAGGCGGTGGAGGAGGTGGTGGTGGATATGGTGGAGGTGGCGGTGGTGGATATGGAGGAGGTGGCGGTGGATATGGCGGTGGTGGCCGTCGTGAAGGTGGATACAACAGAAGCAGTGGTGGTGGAGGTTATGGTAGTGGAGGAGGAGGTGGTTATGGTGGAGGAAGGGATCGTGGATATGGTGGTGGCGGTGATCGTGGTTATGGTGGTGGAGGTGGTGATAGGGGATATGGTGGTGGTGGTGATCGTGGATATGGTGGAGGTGGCTACTCACGCGGTGGAGGTGGTGGTGGAAGCGGTGGAAACTGGAGGGATAGGGATTAG 588 0.5306 MASSDVEYRCFVGGLAWATDSDALAKAFSSYGEITDSKVINDRESGRSRGFGFVTFATEKSMRDAIEGMNGQDIDGRNITVNEAQSRSRGGGGGGGGYGGGGGGGYGGGGGGYGGGGRREGGYNRSSGGGGYGSGGGGGYGGGRDRGYGGGGDRGYGGGGGDRGYGGGGDRGYGGGGYSRGGGGGGSGGNWRDRD* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2308 195 PANTHER TRANSFORMER-2-RELATED 1 122 - -
Tpr3g2308 195 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 1 122 - -
Tpr3g2308 195 SMART rrm1_1 9 82 IPR000504 GO:0003723
Tpr3g2308 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Tpr3g2308 195 Gene3D - 1 124 IPR012677 -
Tpr3g2308 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Tpr3g2308 195 MobiDBLite consensus disorder prediction 118 195 - -
Tpr3g2308 195 SUPERFAMILY RNA-binding domain, RBD 8 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2308 Tpr-Chr3 21839357 21840549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2308 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 3.61e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2308 - K13195 ccaj:109800369 153.68