Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2306 ATGTTTCTTTCATGTCAAAAACACACCCTTTACTATCATTCTTCTTATTCTATCCACTCTTCAAAAAACCCAAAACTCATTATAATCAATTGTCAAAACCCAAATGAACAACAACAACAACACCAAAAAAACCACCCTATTCCAAGAACACAAAATTCAAAATCAACATCATTTCTAATTCACCACCTTTCACAAAAAAACAACAACAACAACAACACTAACCCTTCACCCACTGAGCTACAAGACCCAACACCCCATGAAGAAAAAATCAAACTTTTAGAACTTTCTTTAGTAAGAAAAAGAACCCCTCAATTTCCTGGTTCAATTTATGCTCAATCTTCTAGTGATCCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTACCATTTTTCAATCGGGTGATGAAGAAGAGGAAAAGATGATTATGCAAGCTATTGAGATTCGTAGGAAGGTTACTCAAGAAGTTTTTAAAGGTGCAATGCAAAAGGGTAAATTTGGAATTACTTATAGTACTAATTTGGTTGATAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTACCGGAATATTCCAACTCAACTTTTAATTTACGCGCCAAAACTGTTATTGAAGATTCACAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCGTTATCGTATCCTGAGATAGCTAAGCTTATTTTGATGTCAAGAGGGAAACTTGAGTCCATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGCTGGTTAAGGGAGATTTTATTGGTGATGCAATGTTGAAGAGTGGAGATAATTTTTTGCAGCGGAGCGATGCGGAGTTGGATGAGATTGTTAAGTATTTAATGTCTAATGGAGTTAGGAGGGACTGGATGGGTTATGTTTTGAGTCGGTGTCCGAAGTTGTTATCTTATAACTTGGAAGAAGTGAAGACTCGTGTGCAGTTCTATCTGGATATGGGTTTAGACGAGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCACTTGGTCACTATAGTCTCGAAGAAATGCACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTAGGCCAGAGTTGATGGCGTGCAGCATTGAAGAACGGTGGCAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGAATGCTTATCATTAAACCAATGGTATTTTGCGTTGACTTGGAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACTTGGGGGTTACAAATGACGGGATTGCCAACATGCTTGTAAAATTTCCTCCTCTACTCACTTACAGCCTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGCAAAGGTTGTTGCTCTTGGACCTCAACTCTTAGGATGCCACATAGTACATAAGCTGGAAGTAAATGTAAAATATTATTTGTCTCTTGGCATACGCCTTCGGCAACTTGGTGAAATGGTTGCTGATTTCCCGATGCTGCTCAGATACAATACAGATGTTCTCCGTCCTAAGTATACGTATCTGCGGAGAACCATGGTTCGAACTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTGGAGGGTCGAATTATCCCAAGACACAAGGTTCTGGTAGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTGACAAAATGGTCAAGAATATTATTAGAAAACGCAACAAAATTCAATCTTCTGTCATGAAGGCGAATACCACTCATCCACAATCTCTCATTGCAGGGGATATTACTACTACCCCCTAG 1896 0.3871 MFLSCQKHTLYYHSSYSIHSSKNPKLIIINCQNPNEQQQQHQKNHPIPRTQNSKSTSFLIHHLSQKNNNNNNTNPSPTELQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSSSDPDVGSSLPPLRTIFQSGDEEEEKMIMQAIEIRRKVTQEVFKGAMQKGKFGITYSTNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPEIAKLILMSRGKLESIRNRVEWLKSVLVKGDFIGDAMLKSGDNFLQRSDAELDEIVKYLMSNGVRRDWMGYVLSRCPKLLSYNLEEVKTRVQFYLDMGLDEKDFGTMVFDFPKALGHYSLEEMHRKVDYLKEFGLESKDVGKLLAFRPELMACSIEERWQPLVKYLYYYGITRDGMKRMLIIKPMVFCVDLEMTIVPKVKFFQDLGVTNDGIANMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVTEESIAKVVALGPQLLGCHIVHKLEVNVKYYLSLGIRLRQLGEMVADFPMLLRYNTDVLRPKYTYLRRTMVRTLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFDKMVKNIIRKRNKIQSSVMKANTTHPQSLIAGDITTTP* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2306 631 PANTHER CGI-12 PROTEIN-RELATED 67 617 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 Pfam mTERF 424 593 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 Pfam mTERF 238 422 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 MobiDBLite consensus disorder prediction 65 84 - -
Tpr3g2306 631 Gene3D Transcription termination factor 3, mitochondrial 377 601 IPR038538 -
Tpr3g2306 631 SMART mt_12 371 402 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 SMART mt_12 335 366 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 SMART mt_12 300 330 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 SMART mt_12 443 475 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 SMART mt_12 407 438 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 SMART mt_12 480 511 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 SMART mt_12 516 546 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 SMART mt_12 548 579 IPR003690 GO:0003690|GO:0006355
Tpr3g2306 631 MobiDBLite consensus disorder prediction 65 81 - -
Tpr3g2306 631 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 67 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2306 Tpr-Chr3 21808205 21812688 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr3g2306 mTERF 7.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2306 K15032 - zju:107426883 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2306 3 21808205 21812688 Tpr3g2306 3 21808205 21812688 ECH