Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2301 ATGGTGTTTTGCGAAAACAAGAAGTTGGATTGTAAGTTTGAAGATGTTGCTGATTTATTACCTGGGAAAGAAATTGGGGCTATTAAGGTTAGGGTTCTTCGTCTGTGGAAAGTACCTGCTTTTATGAATCCAATGGAGTTCAATTCACTTGAGATGGTTCTATGTGATGGGAAGGGGGGGAAAATTCATGCTTCTGTTAGGAAGCAACTTATTAATATGTTTGATTCGAAGTTGGAAGAGGGCGGAGTGTATGAGATATCCTCTCTGTCTATTTTTCCCGAGAGTGGTTTGTATCGAACGACTCTTCATCGATACAAGCTTGGTTTTCAAAGTAAGACTGTAGTCAAACCTTCTCAGAGTTCTGATATATCGCAATATGGTTTTAGCTTCACAAACATTGATGAGATTTGTTCGTTTACTCATGATTATGAGTTTCTGGTTGATGTTGTTGGCGTTATGACTGGGATATCTGCTGAGCGAGAGTATATAAGGGATGGCAAGATTACTAAGATGGTTAACATTGAGCTTACTGATCACACTGGTAAGTGTGAATGTGCTTTGTTTGGTGACTATGTTGATGATTTAAATAAGAAGATGGGGAAATTGACTTCTGGGTTGCCCATTGTTGCTGTTCAATTTGCAAAGGTGAAGATGTTTAGAGACAAGGCATCTATTCAAAATGTTTTACATGCTACTAGGATTTTTGTTAATGCTGATATTCCAGAGCTCGAATCATTTAAGAGCAGTATTGCGGTGCATGGTATTGAGAGCGATACTATTGTTCCATTGATTGGTAGTCAGCCAAGACCTTCTCTTGAAGAAGAATTTCTTCAGATGCATCCCAAAAAAACGGTGGCTCAGTTGAATGTTTTGGTTGAGGATGGTGTTTTTGCTGTTTGTGGTGAAGTTGTTGGTGTAGTAGATAGTCAGAATTGGTGGTATCCTGCGTGCAAATGTCACAAAGCTGTAGTTCCTGATTCAGGTTCTTACTTCTGTAGTTCTTGTGACAGACATGTTTTCCAAGTTATACCAAGGTTTAGGGTAAAGTTTGAAATTGTGGATGGTGAATCATCTTGCATTGTAGTTGTGTTTGATTCTGAAATGAGCTATATTCTTGAAAAATCATGTGCATTTTTTGTTGCTCAATCAAAGGCTAGAAATGGTGGACCACATCCTATTGAGTTTGATGGTTTGATTGGGAAGAAAATGTTGTTTGCTGTTGCAGTGTCTGGTAAGCAGTCTTCTATGGGTGATGGTTCATATAGGGTAAGAAGAATTTGTATGGACCCTGTTATTATTGAGAAGTTCTGTTCTCAAGGAGGTTTTTGTACTCCAACAAAGGTGATGTCTCCTGTTGTTGATTTCGAATCCGAAAGCTTGAGTGATGATAATGTTGCTGATGATGATTCTGAGGCTCTCCAATTTGTTGACAATCTTATAGTTACTCCACCTACTTCAAGTGTTGACATTGATGATGAAAGTGATGGTCCGTTTGTTGTTAAGAGGAATCTCTCCAAAGCATTTGATGGAGCTGCTAAGCCTAAGCGTAGTATTCGTCTAAAAAAAGTCAAAATTGAGAAGGATTGA 1587 0.385 MVFCENKKLDCKFEDVADLLPGKEIGAIKVRVLRLWKVPAFMNPMEFNSLEMVLCDGKGGKIHASVRKQLINMFDSKLEEGGVYEISSLSIFPESGLYRTTLHRYKLGFQSKTVVKPSQSSDISQYGFSFTNIDEICSFTHDYEFLVDVVGVMTGISAEREYIRDGKITKMVNIELTDHTGKCECALFGDYVDDLNKKMGKLTSGLPIVAVQFAKVKMFRDKASIQNVLHATRIFVNADIPELESFKSSIAVHGIESDTIVPLIGSQPRPSLEEEFLQMHPKKTVAQLNVLVEDGVFAVCGEVVGVVDSQNWWYPACKCHKAVVPDSGSYFCSSCDRHVFQVIPRFRVKFEIVDGESSCIVVVFDSEMSYILEKSCAFFVAQSKARNGGPHPIEFDGLIGKKMLFAVAVSGKQSSMGDGSYRVRRICMDPVIIEKFCSQGGFCTPTKVMSPVVDFESESLSDDNVADDDSEALQFVDNLIVTPPTSSVDIDDESDGPFVVKRNLSKAFDGAAKPKRSIRLKKVKIEKD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2301 528 SUPERFAMILY Nucleic acid-binding proteins 128 254 IPR012340 -
Tpr3g2301 528 PANTHER REPLICATION FACTOR A 1, RFA1 26 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g2301 528 SUPERFAMILY Nucleic acid-binding proteins 293 428 IPR012340 -
Tpr3g2301 528 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 26 377 - -
Tpr3g2301 528 Gene3D - 12 117 IPR012340 -
Tpr3g2301 528 SUPERFAMILY Nucleic acid-binding proteins 12 119 IPR012340 -
Tpr3g2301 528 CDD RPA1_DBD_B_like 148 249 - -
Tpr3g2301 528 Pfam Replication factor-A C terminal domain 303 382 IPR013955 -
Tpr3g2301 528 Gene3D - 274 437 IPR012340 -
Tpr3g2301 528 CDD RPA1_DBD_C 296 426 IPR013955 -
Tpr3g2301 528 Gene3D - 121 257 IPR012340 -
Tpr3g2301 528 Pfam Domain of unknown function DUF223 51 144 IPR003871 -
Tpr3g2301 528 CDD RPA1_DBD_A_like 28 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2301 Tpr-Chr3 21770403 21773455 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2301 19 372 Core DNA Replication Machinery Family AT5G08020 23.577 7.62e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2301 - - mtr:MTR_8g062030 428.328