Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2300 ATGGCATGCATCGAAGGAAAGAGTTCTTGTGACAACATCTTGAGTGTTAGATCCTCAAAAAATGATGGAATTTATGAGGTTAGAGTTCTCAAAAGATGGAGAGTTCCTGACTTTTTTAAGCCTGAGATGTTTGATTCTGTTGCAATGGTTCTGATTGACAAACATGGTCACAAAATTGAAGCGGTGATCCCAGAAAATCTTCTCTGTGTGTTCGACGAAAAGATTGTTGAGGGAAGGGTTTATAGGATTTCATCACTTTCTGTGAAGTTGAATTTTGGTCATTCCGTTTCAACTTTTCACAGGTACAAGTTTGAGTTTAACAAGAATACAAAGGTGGAACCATGTAGTAACTGTGCTGTTATCCCAACATACGGGTTATCTTTGATTGGTGCTGATGATGTTCTTAAGAAAAAAGAAAAAAAGGAATGCTATAAGTATTTGGTTGATGTTGTTGGTGTTATTACTAAAGTTCAGCATAATAAGGATTTTTATCCCGATGGAAAAGTTATCAGATCTGTGACTTTTAAGTTAAACAATGAAAGGAAATCTTTTTGCTGCGAGCTATATGGTAGTCTTGTGGATGATTTCAAGAATCTTGTGAAGAGTTGTTCCAATGGATTGCCTATAGTGGTGTTGCAGTTTGTTAGGATCAATTATGTTCAAGGTGGGACATTAGTTCAAGGTGTTGAAAATGTTACTAAAATTCATGTGAATCCAGCCACGGATGAGCTGCTGAGATTTAAGAGTGGATTGGTGTTATATTTAAGTAGGAGTGCAAATTATGGTGGTCTTCTTCGTTCCTCTCTTGAACCACGTCTTTCTGAGATGCTTGATTTCCTGAAGGATTATCCTGTGAAGACTATTGGTGAGCTGAAATCTGATCCAGAGCTTGGTACCTTTATTGTGAATGCAAGAATGCTTGATATTGTTAAGATGGATCCTTGGTGGTACCCTATCTGCAAGTGTAATAAAATATTTGATAAGTATATTGGGGCATTCCATTGTACAAAATGCAATGCAGCTGATTTTAAAGCAGCTCCTAAGGTGAAGTTAACTGTCGAAGTAGAGGATGAAACTGGATATGCGTTGGTTACTTCTTTCGACCATGTAATGGCAAAACTGGCTGTCTATGATACTTCTGCTCGGGAGATTAATAGTGATAACTTTTATCGCGCTTTTGCTGCTATCATGGGAAAGAGTATTATGTGGATTGTCAAGAAAACGTTTCATGGGCCTGATTTTGTTGGTTGTTCTTTTGATCTGGTGCGTGTGTCTAATCATAAAGCTGTAATTGAATATTTTAGAGGGAAAGGACTTTATACTACTCCATCTAAGATTGTTAGGAGGAGATTGTTGAGTAATGTAATTGCTGGGGAATTAAATGAGTTGCTTCCATCCACCACTACAACAAGTGATCTTGAGGATCTATATTTGTCAGCAGCTTATCCCATTGGCTTGGACAACGATCGTGCTTCCTCATCTGGTTCAAAGCGTCCAAGAGAATGA 1506 0.3785 MACIEGKSSCDNILSVRSSKNDGIYEVRVLKRWRVPDFFKPEMFDSVAMVLIDKHGHKIEAVIPENLLCVFDEKIVEGRVYRISSLSVKLNFGHSVSTFHRYKFEFNKNTKVEPCSNCAVIPTYGLSLIGADDVLKKKEKKECYKYLVDVVGVITKVQHNKDFYPDGKVIRSVTFKLNNERKSFCCELYGSLVDDFKNLVKSCSNGLPIVVLQFVRINYVQGGTLVQGVENVTKIHVNPATDELLRFKSGLVLYLSRSANYGGLLRSSLEPRLSEMLDFLKDYPVKTIGELKSDPELGTFIVNARMLDIVKMDPWWYPICKCNKIFDKYIGAFHCTKCNAADFKAAPKVKLTVEVEDETGYALVTSFDHVMAKLAVYDTSAREINSDNFYRAFAAIMGKSIMWIVKKTFHGPDFVGCSFDLVRVSNHKAVIEYFRGKGLYTTPSKIVRRRLLSNVIAGELNELLPSTTTTSDLEDLYLSAAYPIGLDNDRASSSGSKRPRE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2300 501 Pfam Replication factor-A C terminal domain 306 385 IPR013955 -
Tpr3g2300 501 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 18 373 - -
Tpr3g2300 501 PANTHER REPLICATION FACTOR A 1, RFA1 18 373 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g2300 501 Pfam Domain of unknown function DUF223 49 142 IPR003871 -
Tpr3g2300 501 Gene3D - 11 117 IPR012340 -
Tpr3g2300 501 SUPERFAMILY Nucleic acid-binding proteins 28 118 IPR012340 -
Tpr3g2300 501 SUPERFAMILY Nucleic acid-binding proteins 145 249 IPR012340 -
Tpr3g2300 501 Gene3D - 280 431 IPR012340 -
Tpr3g2300 501 CDD RPA1_DBD_B_like 149 249 - -
Tpr3g2300 501 SUPERFAMILY Nucleic acid-binding proteins 283 408 IPR012340 -
Tpr3g2300 501 Gene3D - 120 251 IPR012340 -
Tpr3g2300 501 CDD RPA1_DBD_A_like 27 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2300 Tpr-Chr3 21763231 21765628 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2300 51 374 Core DNA Replication Machinery Family AT5G08020 23.055 1.24e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2300 - - mtr:MTR_8g062030 222.631