Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2296 ATGACTTCTTTCACTAACAATCCATCCTTCCCGGTTGGTCTCAAAGTTCTTGCAGTTGGTGCTCTCTGCACTATACGGGACATATGCAATGACTTGTGCTATCAAGTGATGTCTCTTGATCCCACGCCTTCTTCTGTTATGGATTCAATTACCCAAGGGGCTTGCGCATTCTGGTCCAAGCCCTTGGATGAGAACCAATTTAAGATCATGTGGCAACATCTTGTACGGAAGGCTTTGAGCGAAACTCCTGAACTTCCTCAAACATTGGAGGTTATAGGCGGAAAAAAACGAGGAAGAGAAGATGTTGATTTACCAAAACAACCGCTTCCAAAGAAAAGCCGTTTGTCATGGACACCCGACTTGGACAAACAATTCTTATCGGCTGTGAATCAACTCGGGGTTAATAGTATTAATGCAACACCCAAAAAAATTCTTAAGCTGATGAACTTTCCCGATTTGACAACAGGGCAAGTAGCTAGCCATTTACAGTTTGTTTTGCAGAAATATAGGAAGTATTTAAAAGGGGAAATAAAAAAATCAAAGGTCAGTAGGCTATCTGCTTTTCAAGGTCACGATGAAATTCCTACACAACAACAACATTTGACCGAAATTGGCGAATGCGACATCTTTTTTGACCTGTCTGAATTGTTCCCAGATCATGTTGATAACTTATAA 675 0.4089 MTSFTNNPSFPVGLKVLAVGALCTIRDICNDLCYQVMSLDPTPSSVMDSITQGACAFWSKPLDENQFKIMWQHLVRKALSETPELPQTLEVIGGKKRGREDVDLPKQPLPKKSRLSWTPDLDKQFLSAVNQLGVNSINATPKKILKLMNFPDLTTGQVASHLQFVLQKYRKYLKGEIKKSKVSRLSAFQGHDEIPTQQQHLTEIGECDIFFDLSELFPDHVDNL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2296 224 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 185 IPR045279 GO:0009736
Tpr3g2296 224 Pfam Myb-like DNA-binding domain 115 163 IPR001005 -
Tpr3g2296 224 Gene3D - 109 175 - -
Tpr3g2296 224 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
Tpr3g2296 224 SUPERFAMILY Homeodomain-like 110 171 IPR009057 -
Tpr3g2296 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 170 IPR017930 -
Tpr3g2296 224 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 31 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2296 Tpr-Chr3 21730822 21733471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2296 25 173 Response Regulator Gene Family AT1G67710 35.955 2.65e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr3g2296 Myb_DNA-binding 4.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2296 - K14491 mtr:MTR_4g021845 148.673