Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2266 ATGGACATGCTTTCTATAAGACAACAAGATGCGCGCACACTGCTTATTTATCATCGTTGGGATGTGGACCATTTGTTTGAAGTTTATGTAGAAAAAGGGAAGGAATTTATGTTTGCTCAGGCTGGTGTTAGTGTGGATGAATATCATGATTCTGACTCGCCGGTTAGTGCTGTAGTAATGTGTGAAATCTGCATAGACGATGTTCCAAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTTGGACACAACATTTTTTAGTCAAGGTAAATGAGGGTCAAAGTAAACGCATCCGATGCATGGCTCACAAATGTAATTCAATTTGCGATGAAACTGTCGTAATAACTCTACTCGGTAGAAGGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTACATTGACGACAATAAGAAAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGCTGAGGGTGATGACTTGTGTGAGGTAGAATGTTCATGTGGTGAACAATTTTGTTTCAATTGCTTGTCAGAGGCACACTCCCCATGTTCATGTTTGATGTGGGAGCTTTGGCAACATGAGCATCAAGATGAAGTAGAATCTGATAATTGGATAATTATTCATACGAAACCTTGTCCAAAGTGCCACAAACCGGTGGAAAAGAATGGTGGTTGTAATTGGGTTGGCTGTATTTGCGGCCAACCATTTTGTTGGTTGTGTGGTGGAGCGACTGGACTGCAGCATACCAATTATAGCATAGCTGGTCATGACTGTGGTCACTACAAAGAACCTGAGAAAACAGTTGACCACGAAAAGAGGGATCTCTATCGGTACAAACATTATTATAACCGATATAAAGCTCACAAACACTCCTTTAAGTTTGAAAGTAAACTGAAAGGTAGCATACAAGAGAAGATTCCTATTTTCGAAAAGAAACATTCTCAACGAAACAAATATCAACTCGGAGATTATAGCTGGGTAAATAATGGACTCTCTAGACTTCTCAGATCTAGGTGCATCCTTTCATACTCATATGCATTTGCATTTTATATGTTTGGAGATGATCTTTTCAAAGAGGAAATGTTAGAAGCTGAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTAGAGGCAAATGTTGAAAGACTCGCTGAGATTTTGCCGGAGGCTTTCAAATCCTTACAATATGGTAAGGTTATGAAGAGAAGGATGCAGATAATAACTCTGTCAACAGTTATTGACGATCTTTGTAAAAAAATGTACGAATGCATCGAGAATGATTTATTGGAATCTGTTAATCTTGGTAGTATCCACATTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCATAG 1398 0.3941 MDMLSIRQQDARTLLIYHRWDVDHLFEVYVEKGKEFMFAQAGVSVDEYHDSDSPVSAVVMCEICIDDVPSDEATRMDCGHCFCNSCWTQHFLVKVNEGQSKRIRCMAHKCNSICDETVVITLLGRRHPDMAEKYERFLLESYIDDNKKVKWCPSTPHCGNAIRAEGDDLCEVECSCGEQFCFNCLSEAHSPCSCLMWELWQHEHQDEVESDNWIIIHTKPCPKCHKPVEKNGGCNWVGCICGQPFCWLCGGATGLQHTNYSIAGHDCGHYKEPEKTVDHEKRDLYRYKHYYNRYKAHKHSFKFESKLKGSIQEKIPIFEKKHSQRNKYQLGDYSWVNNGLSRLLRSRCILSYSYAFAFYMFGDDLFKEEMLEAEREIKQNLFEDQQQQLEANVERLAEILPEAFKSLQYGKVMKRRMQIITLSTVIDDLCKKMYECIENDLLESVNLGSIHIIAPYKSKGIERAS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2266 465 ProSiteProfiles TRIAD supradomain profile. 57 271 IPR044066 -
Tpr3g2266 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 146 IPR013083 -
Tpr3g2266 465 SUPERFAMILY RING/U-box 213 256 - -
Tpr3g2266 465 ProSiteProfiles Zinc finger RING-type profile. 61 109 IPR001841 -
Tpr3g2266 465 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 444 - -
Tpr3g2266 465 SUPERFAMILY RING/U-box 132 201 - -
Tpr3g2266 465 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 444 IPR031127 GO:0004842|GO:0016567
Tpr3g2266 465 Gene3D - 190 444 - -
Tpr3g2266 465 Pfam IBR domain, a half RING-finger domain 132 194 IPR002867 -
Tpr3g2266 465 Pfam Ariadne domain 272 465 IPR045840 -
Tpr3g2266 465 Coils Coil 368 388 - -
Tpr3g2266 465 SMART ibrneu5 198 267 IPR002867 -
Tpr3g2266 465 SMART ibrneu5 132 194 IPR002867 -
Tpr3g2266 465 SUPERFAMILY RING/U-box 58 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2266 Tpr-Chr3 21294301 21304517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2266 1 465 ARIADNE family AT2G16090 63.539 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2266 K11968 - gmx:100783343 741.495