Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2233 ATGCCTTCTCCTTCATTTCACAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGCAACTGAGGCTTCCAGATGATTTTGTGAAGAAATATGGGGGCAATATGTCTTCGATTGTCACTCTCACAGTTCCTGATGGCAGCGTGTGGCGTGTAGGATTAAAAAAAGAAGACAACAAATTTTGGTTCCTCAATGGTTGGCATGAATTTGTTCAAAACTATTCCATTGGTACTGGATACTTGTTGTTATTCAGATATGAAGGAAAGTCGACTTTCATTGTTAATATTTACAGTTTTGCTACTTCTGAGATTAACTATAAATCACCTGCACAAAGCAGTAACAAAGCGCCTCACTTTGCAAAACAACTTGAAGTTTTCGAAGATTTGGAAGATGAAGATTCAATTGAAATGATGCATTTGTCGCCTACAAACCTTACACATAGCCCATTGCAAAACAAAGCTGTTTCTGGATCAGCCGATAAATTTACGCCTGGCAAACCTCATTCCCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGTCTAGACAACCAGCTGACCCGAGATATAGGTCTTCAGTTTAATGTAGTTGAGTTTAAAAAGTCTACTGAAGAGGTGAAGTTGCGTACGGCTACTGATGAAAAAGTTAAAAAAACTGTGGCTACTGAGGAAAAGGTTAAAAAATCTGTGACAAAGAAGCGGAAATCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAAGTAGAAATGCGCAATAGATTTTACGAAAGTGCATCTGCAAGAAAAAGAACTGCGACAGCTGAAGAAAGAGAAAAGGCCATGAATGAAGCAAAAGCATTTGAACCATCTAATCCTTTCTGTCGTGTCGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTACCATCCTGCTTTGCAGAGAAGCATTTGAAAGGTGTTGCAGGCTTTATCAAGCTTCAAATCTCTGATGGTGGGAAACAGTGGTCTGTTCGCTGTCTTTATAACAGTGGTAAAGCTAAGTTAAGCCAAGGGTGGTTTGAATTTGCATTAGAGAACAATTTAGGTGAAGGTGATGTCTGTGTATTCGAGCTGGTTCCAGCTAATGAAGTAGTGCTGCAAGTTACTTTTTTTCGTATTACCTTGGATGACGGACTGTTGAGCCCGCGGCCTGTGCAGCAGAACCAGCATGTCACCACAGCTAAACCATTAAAAGTGCCTTTTAGTATGACCTGA 1248 0.4054 MPSPSFHKLVLPSTLQAKQLRLPDDFVKKYGGNMSSIVTLTVPDGSVWRVGLKKEDNKFWFLNGWHEFVQNYSIGTGYLLLFRYEGKSTFIVNIYSFATSEINYKSPAQSSNKAPHFAKQLEVFEDLEDEDSIEMMHLSPTNLTHSPLQNKAVSGSADKFTPGKPHSPPALQNLFNGSKLNSLDNQLTRDIGLQFNVVEFKKSTEEVKLRTATDEKVKKTVATEEKVKKSVTKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAMNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLKGVAGFIKLQISDGGKQWSVRCLYNSGKAKLSQGWFEFALENNLGEGDVCVFELVPANEVVLQVTFFRITLDDGLLSPRPVQQNQHVTTAKPLKVPFSMT* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2233 415 SMART B3_2 289 385 IPR003340 GO:0003677
Tpr3g2233 415 SMART B3_2 6 98 IPR003340 GO:0003677
Tpr3g2233 415 MobiDBLite consensus disorder prediction 226 250 - -
Tpr3g2233 415 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Tpr3g2233 415 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 409 - -
Tpr3g2233 415 Pfam B3 DNA binding domain 292 383 IPR003340 GO:0003677
Tpr3g2233 415 Pfam B3 DNA binding domain 9 95 IPR003340 GO:0003677
Tpr3g2233 415 Gene3D - 1 98 IPR015300 -
Tpr3g2233 415 PANTHER B3 DOMAIN-CONTAINING 1 409 - -
Tpr3g2233 415 CDD B3_DNA 287 383 IPR003340 GO:0003677
Tpr3g2233 415 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Tpr3g2233 415 Gene3D - 266 385 IPR015300 -
Tpr3g2233 415 SUPERFAMILY DNA-binding pseudobarrel domain 282 383 IPR015300 -
Tpr3g2233 415 ProSiteProfiles B3 DNA-binding domain profile. 289 385 IPR003340 GO:0003677
Tpr3g2233 415 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2233 Tpr-Chr3 20944554 20947754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2233 1 384 B3 DNA Binding Superfamily AT3G18990 50.259 3.40e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g2233 B3 8.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2233 - - gmx:100813285 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2233 3 20944554 20947754 Tpr3g2233 3 20944554 20947754 ECH