Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2232 ATGCCTTCTCCTTCATTTCACAAGCTTGTTCTACCATCCACTCTTCAAGCTAAGCAACTGATGGATCATGATCAACAAGACAAGCCATCTTTCTTTGCTATCATTAAAGAAGGCTTCAACACCAACTCCATGAAAGTCCCAAAGAAGATTGTTATGAATTTGGGTGAAGAGTTGTGGAACAATGCTTTGATTTTTCTGATAGGCTCTTCTGGTGAGAAATGGCAAATGAGTATTTTGAAGAAAGAAAATGACATATATCTGCAAAATATTGGTTGGCAAAAATTTCTGAAAGACAACTCGGTGTTAAATGAAGAGCTCTTGCTTTTCACATATAAGGAAGAGAACAGGTTCCAGGTTCAAATTTTTTGTAAGAATGGATTAGAGAGACCATGCGTCCAGAAAGAACCAGAAGTTGCAGCTCCAATTGTACCCGAGACAACGGGGAGTAGCCAACAAAAAACCCCTGCTGCTGATAGTGTATGCGTCAAGGAAGAAAAAGAAGAAGCTGTAGCACCAATGGTGGTGAAGAGAAAGAGGGGTAGACCAAGAAAAAATGCTCCTCCTCCTCCTGAGAGATGCTTCAAGGAAAAGGGAGCAGAAGCAGAAGCTGCAGCAACAATGGCGGCCAAAGGAATGGAGGATAGACCAAGAACAAATGATTTTCCTGAGAGAGTATGTGTCAAGAAAAAAGAAGCAGAAGCTGCGGCAACAACAGTGGCCAAAGGAATGAAAGGTAGCCCAAGAAAAAATGCCTCTCCTGAGAGAGTATGTGTATGTGTCGCGAAAAAAGAAGCAGAAGCTGCAAGAGCGACAATGGTGGCCAAAGGAATGATGAATAGGCCAAAATATGTTTCTCCTGAGAGAGTATTCGTCATGAAAAAAGTAGCAGAATCTACAACATCAACAATGGCGGCCAAGGGAATGAAAGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTCATGAAAAAAGAAGCAGAATCTGCAACATCAACAATGGCGGCCAGAGGAATGAAGGATATACCAAAATATGTTTCTCCTGTGAGAGTATTCGTCCCGGAAAAAGAAGCAGAAGCTGCAACAGAAACAATGGCGGCCAAAGGAACGAAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTCGTGAAAAAAGAAGCAGAAGCTGCAACATCAACAATGGGAGCCAAGGGAATGAAGGATAGACCAAAATATGTTACTCCTGAGAGAGTATTTGTCATAAAAAAAGAAGCAGAAGCTGCAGCAACAATGGTGGCCAGAGGAATAAAGGATAGACCAAGAAACAATGCTTCCCCTCAAAGTGTGTGCCTCAAGAAAACAGAAGCAGTAGCTGCAGAAACAATGGTGGTTAAAGGAATGAAGGGTAGGCCAAGAAGAAATTCTGCTCCTGCTGTTATCATAATAGACTGA 1437 0.4182 MPSPSFHKLVLPSTLQAKQLMDHDQQDKPSFFAIIKEGFNTNSMKVPKKIVMNLGEELWNNALIFLIGSSGEKWQMSILKKENDIYLQNIGWQKFLKDNSVLNEELLLFTYKEENRFQVQIFCKNGLERPCVQKEPEVAAPIVPETTGSSQQKTPAADSVCVKEEKEEAVAPMVVKRKRGRPRKNAPPPPERCFKEKGAEAEAAATMAAKGMEDRPRTNDFPERVCVKKKEAEAAATTVAKGMKGSPRKNASPERVCVCVAKKEAEAARATMVAKGMMNRPKYVSPERVFVMKKVAESTTSTMAAKGMKDRPKYVSPERVFVMKKEAESATSTMAARGMKDIPKYVSPVRVFVPEKEAEAATETMAAKGTKDRPKYVSPERVFVVKKEAEAATSTMGAKGMKDRPKYVTPERVFVIKKEAEAAATMVARGIKDRPRNNASPQSVCLKKTEAVAAETMVVKGMKGRPRRNSAPAVIIID* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2232 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 24 284 - -
Tpr3g2232 478 PANTHER B3 DOMAIN-CONTAINING 24 284 - -
Tpr3g2232 478 CDD B3_DNA 29 123 IPR003340 GO:0003677
Tpr3g2232 478 SMART B3_2 31 125 IPR003340 GO:0003677
Tpr3g2232 478 Pfam B3 DNA binding domain 38 122 IPR003340 GO:0003677
Tpr3g2232 478 SUPERFAMILY DNA-binding pseudobarrel domain 24 126 IPR015300 -
Tpr3g2232 478 ProSiteProfiles B3 DNA-binding domain profile. 29 125 IPR003340 GO:0003677
Tpr3g2232 478 Gene3D - 22 126 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2232 Tpr-Chr3 20929787 20935267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2232 1 122 B3 DNA Binding Superfamily AT3G18990 31.148 5.63e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g2232 B3 4.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2232 - - mtr:MTR_4g068300 230.335