Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2231 ATGGATCATGATCAACAAGACAAGCCATCTTTCTTTGCTATCATTAAAGAAGGCTTCAACACCAACTCCATGAAAGTCCCAAAGAAGATTGTTATGAATTTGGGTGAAGAGTTGTGGAACAATGCTTTGATTTTTCTGATAGGCTCTTCTGGTGAGAAATGGCAAATGAGTATTTTGAAGAAAGAAAATGACATATATCTGCAAAATATTGGTTGGCAAAAATTTCTGAAAGACAACTCGGTGTTAAATGAAGAGCTCTTGCTTTTCACATATAAGGAAGAGAACAGGTTCCGGGTTCAAATTTTTTGTAAGAATGGATTAGAGAGACCATGCGTCCAGAAAGAACCAGAAGTTGCAGCTCCAATTGTACCCGAGACAACGGGGAGTAGCCAACAAAAAACCCCTGCTGGTGATAGTTTATGCGTCAAGGAAGAAAAAGAAGAAGCTGTAGCACCAATGGTGGTGAAGAGAAAGAGGGGTAGACCAAGAAAAAATGCTCCTCCTCCTCCTGAGAGATGCTTCAAGGAAAAGGGAGCAGAAGCAGAAGCTGCAGCAACAATGGCGGCCAAAGGAATGGAGGATAGACCAAGAACAAATGATTTTCCTGAGAGAGTATGTGTCAAGAAAAAAGAAGCAGAAGCTGCGGCAACAACAGTGGCCAAAGGAATGAAAGATAGCCCAAGAAAAAATGCCTCTCCTGAGAGAGTATGTGTATGTGTCGCGAAAAAAGAAGCAGAAGCTGCAAGAGCGACAATGGTGGCCAAAGGAATGATGAATAGGCCAAAATATGTTTCTCCTGAGAGAGTATTCGTCATGAAAAAAGAAGCAGAATCTGCAACATCAACAATGGCGGCCAAGGGAATGAAAGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTCATGAAAAAAGAAGCAGAATCTGCAACATCAACAATGGCGGCCAAGGGAATGAAAGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTCATGAAAAAAGAAGCAGAATCTACAACATCAACAATGGCGGCCAAGGGAATGAAAGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTCATGAAAAAAGAAGCAGAATCTGCAACATCAACAATGGCGGCCAGAGGAATGAAGGATATACCAAAATATGTTTCTCCTGTGAGAGTATTCGTCCCGGAAAAAGAAGCAGAAGCTGCAACAGAAACAATGGCGGCCAAAGGAACGAAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTCGTGAAAAAAGAAGCAGAAGCTGCAACATCAACAATGGGAGCCAAGGGAATGAAGGATAGACCAAAATATGTTACTCCTGAGAGAGTATTTGTCATAAAAAAAGAAGCAGAAGCTGCAGCAACAATGGTGGCCAGAGGAATAAAGGATAGACCAAGAAACAATGCTTCCCCTCAAAGTGTGTGCCTCAAGAAAACAGAAGCAGTAGCTGCAGAAACAATGGTGGTTAAAGGAATGAAGGGTAGGCCAAGAAGAAATTCTGCTCCTGCTGTTATCATAATAGACTGA 1563 0.4146 MDHDQQDKPSFFAIIKEGFNTNSMKVPKKIVMNLGEELWNNALIFLIGSSGEKWQMSILKKENDIYLQNIGWQKFLKDNSVLNEELLLFTYKEENRFRVQIFCKNGLERPCVQKEPEVAAPIVPETTGSSQQKTPAGDSLCVKEEKEEAVAPMVVKRKRGRPRKNAPPPPERCFKEKGAEAEAAATMAAKGMEDRPRTNDFPERVCVKKKEAEAAATTVAKGMKDSPRKNASPERVCVCVAKKEAEAARATMVAKGMMNRPKYVSPERVFVMKKEAESATSTMAAKGMKDRPKYVSPERVFVMKKEAESATSTMAAKGMKDRPKYVSPERVFVMKKEAESTTSTMAAKGMKDRPKYVSPERVFVMKKEAESATSTMAARGMKDIPKYVSPVRVFVPEKEAEAATETMAAKGTKDRPKYVSPERVFVVKKEAEAATSTMGAKGMKDRPKYVTPERVFVIKKEAEAAATMVARGIKDRPRNNASPQSVCLKKTEAVAAETMVVKGMKGRPRRNSAPAVIIID* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2231 520 ProSiteProfiles B3 DNA-binding domain profile. 9 105 IPR003340 GO:0003677
Tpr3g2231 520 CDD B3_DNA 9 103 IPR003340 GO:0003677
Tpr3g2231 520 Pfam B3 DNA binding domain 18 103 IPR003340 GO:0003677
Tpr3g2231 520 Gene3D - 2 106 IPR015300 -
Tpr3g2231 520 SMART B3_2 11 105 IPR003340 GO:0003677
Tpr3g2231 520 SUPERFAMILY DNA-binding pseudobarrel domain 4 106 IPR015300 -
Tpr3g2231 520 PANTHER B3 DOMAIN-CONTAINING 4 266 - -
Tpr3g2231 520 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 4 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2231 Tpr-Chr3 20916004 20919077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2231 4 108 REM Transcription Factor Family AT5G09780 28.037 3.19e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g2231 B3 3.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2231 - - mtr:MTR_4g068300 228.409