Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2212 ATGCCGCTTCCTGCGAAACCAACGAGGCCACTACATGAAACCGGCAGAGATTCAGATGAATCGTCGACCCCTTCAAACAACCTATGGGTTGGAAATCTAACGCCGGACGTTAGAGATTCCGATCTGATGGATCTATTCGCTCAATACGGCGCTCTCGATAGCGTTACCTCTTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGTATCGAAGATGCAAAAGCCGCTAAAAACGCTCTTCAAGGATTCTCTTTTCGAGGCAATTCATTGAAAATTGAATTTGCTAGACCGGCAAGGCCATGTAAACAACTTTGGGTCGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGACTTCCGTAAATTTGGTAAAATTGAGGATTACAAGTTCATCAGAGAAAGAAATACTGCATGTGTTGAATTTTTCAATTTGGACGATGCTATTCAGGCAATGAAAATCATGAATGGAAAACGTATCGGTGGGGAAAATATTCGTGTCGACTTCCTCCGGTCAAATTCTACAAAAAAAGAACAATTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTCGGGGCCTACTGATTCCTATTCTGGACAAAAAAGGCCACTGAATTCACAGCCTCTAATGGGGAGGAAGGGTGATGGTCAACCCAGTAATATTTTGTGGATCGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTCTATTTGGTGAAATTGAGAGAATAAAGAGTTTTCCTTCAAGGAATTATTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTCTTCAATGATCCTCGCATAACAATTAATTTTTCAAACGGTGACCAGGCGCATGGCAAAGATTACCCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGCACTCATATCGACCGTTACAAATGGATTTATTCGGTCATAATCGTCCTATGGTTCCGAATAATTTTCCTGGCCATTTGCCAACTGGCGGTATTGTTGGTCCAAACATACAAATGCGGCCTTTTGGTCCTCAAAGTGGTCATGAATCTATTGTTTCTGGCCCTGAGTTTAATGAGAATAGTACAATACACAAATTTCAGGATGGTAGCTCGGCAAATAAGAATGGTCCAAACTGGAAAAGACCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGTACCAGGTGCTAGGCTTCCTGCAAGATCAGCCTCTGGTGCATGGGATGTACTTGACATAAACCATAACCCTAGAGATTCTAAGCGCTCTAGGATAGATGGTGCATTACCTAATGATGATCCTTATGGTGGAAGGGGCATCCTTGGACCAGCAAAAGGAGTACCGGGTTCTGTCCAACCTGGTGGTCTTGATCATATATGGCGTGGACTTATTGCTAAAGGAGGAACGCCTGTTTGTCGTGCTAGATGCGTGCCTGTTGGGAAAGGGATCGGGACAGAGCTTCCTGAAGTTGTTGATTGCTCAGCTAGAACGGGATTGGACACACTTGAAAAACACTATGCTGAAGCTATTGATTTTGAGATTGTTTTCTTTCTGCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTACGCTACCTTGGTGCAAAATATCGTGCCGGTGTTGCCAAGTTTATTGATGGTACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCACTGGACCTGAACGTCTATATGGCGTTGTTCTCAAGTTTGCACCAGTACCAAGTGGTGCCCCCGTGCACCAACCACCGCATTTGCCTGCACCGTCAAATCAATATATGCAACAGAGGCCTCCTTCACAGGCTGAATATGATATGAATCCTGCAAAGGAGGAACAAGTTTTGCCCATGGATTACAACAGAATGTTGCATGAGGATTCTAAGCTTCCTGCTAAACAAGTATATCCACCTACAGGTGGGCCTCCTTCAGTTCAGGCTGCAGCTCCGGATTATGCTCCAAACACTGCTGCTTCTGGGTCTCAATCTAGAGTTGCACTGACTCCTGAGCTTATTGCGACTTTAGCTACTTTTCTTCCTACGAATGCACAATCATCTGCTACTGATGGTGCCATGTCAGCTGTAGGCTCCTCAACTGCGAAGCCTCCATTCCCTCATGTGGCACCTAATGATGCGAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAGTCATAATGCTCATTATCAACCTTATCCGCCAGCATCAGCTCCTGGTCACACAGCTCAAGTCTTTTCTGGCAGTTCTCATATTCAAGACAATGCTGTTAGCCAGCAACAGCAAGGAGTTGTTTCATCCAGACACATGTCTAATTTTGTGACACCTAATCAAAGTGGACAGGTAGCTGCATCCTCCCATTTCAGTCATCAGTATCAGGCGGATGTTCCCCCCAATACTCAGAAAGGCTATGGTGTGGTGCCGGGAAGTGATTCCTCTGTTTTATACAATTCTCAGGCTTTTCAGCAACCTAATAGTAACTCCCAGCTTTTCCAGCAACCCAATAATTCTATTGCCTTATCTAGTCAAGTTAACAGTGCTAATCCTCAGCATCAACCTGCCATGCAATATGCTGCAGACCAAATAAACTCAAACCCTCACATTCAGCAGAATCCTGCCTTTGGAGCTGCTCAAGGCACCCCAGAATTAGACTCTGATAAGAACCAGAGATACCAGTCAACATTACAATTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAGCAGCAGCAAACACAAGGAGGACATCAACAATGA 2895 0.4421 MPLPAKPTRPLHETGRDSDESSTPSNNLWVGNLTPDVRDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRIEDAKAAKNALQGFSFRGNSLKIEFARPARPCKQLWVGGISPAVTKEDLEADFRKFGKIEDYKFIRERNTACVEFFNLDDAIQAMKIMNGKRIGGENIRVDFLRSNSTKKEQLLDYGQFQGKSSGPTDSYSGQKRPLNSQPLMGRKGDGQPSNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITINFSNGDQAHGKDYPGFYPGSNGPRPDLFLNEHSYRPLQMDLFGHNRPMVPNNFPGHLPTGGIVGPNIQMRPFGPQSGHESIVSGPEFNENSTIHKFQDGSSANKNGPNWKRPSPPAPGLLSSPVPGARLPARSASGAWDVLDINHNPRDSKRSRIDGALPNDDPYGGRGILGPAKGVPGSVQPGGLDHIWRGLIAKGGTPVCRARCVPVGKGIGTELPEVVDCSARTGLDTLEKHYAEAIDFEIVFFLPDSEEDFASYTEFLRYLGAKYRAGVAKFIDGTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFAPVPSGAPVHQPPHLPAPSNQYMQQRPPSQAEYDMNPAKEEQVLPMDYNRMLHEDSKLPAKQVYPPTGGPPSVQAAAPDYAPNTAASGSQSRVALTPELIATLATFLPTNAQSSATDGAMSAVGSSTAKPPFPHVAPNDANQSQLWKQDHQIADQSIHPPQQFRNMYNSHNAHYQPYPPASAPGHTAQVFSGSSHIQDNAVSQQQQGVVSSRHMSNFVTPNQSGQVAASSHFSHQYQADVPPNTQKGYGVVPGSDSSVLYNSQAFQQPNSNSQLFQQPNNSIALSSQVNSANPQHQPAMQYAADQINSNPHIQQNPAFGAAQGTPELDSDKNQRYQSTLQFAANLLLQIQQQQQQQTQGGHQQ* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2212 964 MobiDBLite consensus disorder prediction 192 215 - -
Tpr3g2212 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Tpr3g2212 964 SUPERFAMILY RNA-binding domain, RBD 14 100 IPR035979 GO:0003676
Tpr3g2212 964 CDD RRM3_Spen 225 295 - -
Tpr3g2212 964 Gene3D - 101 185 IPR012677 -
Tpr3g2212 964 MobiDBLite consensus disorder prediction 793 812 - -
Tpr3g2212 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 961 - -
Tpr3g2212 964 SUPERFAMILY RNA-binding domain, RBD 200 302 IPR035979 GO:0003676
Tpr3g2212 964 MobiDBLite consensus disorder prediction 1 28 - -
Tpr3g2212 964 SUPERFAMILY RNA-binding domain, RBD 100 196 IPR035979 GO:0003676
Tpr3g2212 964 Gene3D - 213 303 IPR012677 -
Tpr3g2212 964 CDD RRM3_Spen 105 174 - -
Tpr3g2212 964 CDD RRM3_Spen 28 97 - -
Tpr3g2212 964 Gene3D - 10 100 IPR012677 -
Tpr3g2212 964 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 961 - -
Tpr3g2212 964 SMART rrm1_1 224 292 IPR000504 GO:0003723
Tpr3g2212 964 SMART rrm1_1 27 94 IPR000504 GO:0003723
Tpr3g2212 964 SMART rrm1_1 104 171 IPR000504 GO:0003723
Tpr3g2212 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Tpr3g2212 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Tpr3g2212 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Tpr3g2212 964 MobiDBLite consensus disorder prediction 192 208 - -
Tpr3g2212 964 Pfam SPOC domain 477 592 IPR012921 -
Tpr3g2212 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Tpr3g2212 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2212 Tpr-Chr3 20717413 20727485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2212 1 350 Eukaryotic Initiation Factors Gene Family AT4G34110 20.707 2.63e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2212 - - mtr:MTR_4g068120 1593.94