Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2206 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACGGTGATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTTTATCTAACAAGCTTCCCAAATGTGATATTTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGCAAAGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCAGCTAACCACCAGCGTTTCCTCGCTACTGGTATCCGCGTGGCTTTGGGTTCTAGTTGCACTAAAGACAATGAGAATAACCAAGTTGAACCATCTAATCCAGACACACAACAAGTTCCTGTCGAAGTTCCTCCTCAGCAAGTCCCTAGTTTCACATCATCTTGGGCTGTTGATGACTTGTTGGAATTTACTGACTTCAATTCACCAGACAAAAAGCAATCTCTCGAGTTTGGAGAGCTTGAATGGTTATCAGATGCCGGTCTATTCAATGAACAATTTCCTCATGAAGGTTTAGCTGCGGCTGAAGTTCCTCAACTTTCTGTAACGCACGCTAACAATGTTGCTTCATACAAAGCACCTAAATCCTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCACAGTGCCTGATCTCGGTTAA 720 0.4181 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSSCTKDNENNQVEPSNPDTQQVPVEVPPQQVPSFTSSWAVDDLLEFTDFNSPDKKQSLEFGELEWLSDAGLFNEQFPHEGLAAAEVPQLSVTHANNVASYKAPKSYMSYKKPRIEVRHEDDDDEHFTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2206 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Tpr3g2206 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tpr3g2206 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Tpr3g2206 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tpr3g2206 239 Gene3D Classic Zinc Finger 1 96 - -
Tpr3g2206 239 CDD Bbox1_BBX-like 5 47 - -
Tpr3g2206 239 CDD Bbox1_BBX-like 56 98 - -
Tpr3g2206 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Tpr3g2206 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Tpr3g2206 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Tpr3g2206 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2206 Tpr-Chr3 20667427 20670478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2206 1 161 Orphan Transcription Factor Family AT1G06040 65.294 4.75e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tpr3g2206 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2206 - - gmx:100779183 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4583 7 54297948 54300069 Tpr3g2206 3 20667427 20670478 PCT