Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2193 ATGTATCCCAAACGTTCTAGTCTAGATGATCCTGATTCCCGGCCGGTGCGCACAAGTGATAGGATTAAGACTAGGCCACCAGCTTATAACCGTGCACCATTTTTGTATTACAACTCAAATCTTAGGCGCCCCAGGAAAAGCAAGAATAAGACAAGAACAGCAGCTTCGCAGATTGCTAAGATGTTGCGTCCAGGGAATCGGAAAGCACGTGATTTGAATACTAATTCTGGCTCTGGCAACCTTCGGCGCTCAACCAGGGAGAGAAGGGTCAATGTAAATCTTATGGAGTTTGCAGACAGCTCTGGATCTGAGGATGCAGATTTAATGAGACCCTCATATCGACCATTGAGAAACCGGATTAGCAACAGTGTCAGCCGGGATGGTGTTGTATCTTCTAAACGCAAAAGAACTGTGGATACTAAATCAGCACCTCGACGTGAAGGTCTACGGCCTCGTCGATCGAAGGCTGCTGGTAGAGAAAGATTAATTTCAGAATCAGATGATGATCAAGACCTTTCAGAGGAGAAAGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAAGAAAATGATGCAGAAGATGGCCATAATGAGATGGAGGGGGATGCCGAGGGTGAAGATGAAGGTGAGGATGAAGGCGAGGAGGAGGATGGCGATGATGATGAAGATGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCAGATGTTCGCAGGTTCTCTATGGAGGAAGGGAAGGCACGGCCAAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAACAGGGATGTAAGGAAGGGTGGATCAAGAGTTCACAAGCGCCATCGCTTAACAAGGCCGGAAGATTCTGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGTCGAGGTGGAAATAGATCTGGCCCACCTTTTCTTTTTGGGGGTGTCGACACACATGGAACAACAGCTTGGGGATTAAACCTTGCTGCATCGGGTTGGGGTCATCAGGGTGATGCTTTTGCTACACTGACTTCAGGGATTCAAACTGCTGGTCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTGCAGATTGATGATAGTGTAAGTTTTGATGATATAGGTGGGCTCTCTGAATACATCGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTATTGTTATGTGGGCCCCCTGGCACAGGGAAAACATTGATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGTCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCGGATGTGCTAAGCAAGTGGGTTGGTGAGGCCGAAAGACAACTGAAACTTCTATTTGAGGAAGCACAAAGGAATCAACCTTCTATTATTTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGATCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGCCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGCAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGCAAGTGGCAGCATCCTCCTCTAGAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTAAAAGCTCTCTGTACTGAAGCGGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTAATTGATGTTAATTCTATCAGGGTAGAAAAGTGTCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCCCATAGAGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATCTGGAGAAAGCCATGAGTACTATATCTGATATTTTCCCTCCAGTATCTGTTGCATCAGAATTGTCCAAACTTTCAATGCTTTCGTATGGGTCTGCAATTCCACTTGTATATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGCACAGGGCTGGATCATCTTGGGCCTGCGGTTTTACACGAACTGGAAAAATTTCCTGTACATTCATTGGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAAACACCAGAGGAGGCGTTGGTACATATATTTGGCGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTTAGAGCTGTTCTCCTGACTATGCTAGAAGAATTGCCATCTGACTTGCCTATCTTACTTCTTGGTACATCCTCAGCTGCACTTGCTGATGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCTCAGTTTATCAAGTGAACATGCCATCTACCGAAGATAGGACCTCATTTTTTGATCGTTTAATAGAAGCTGCTATGTCGATATTGCTGGAGCGAATCAGCAAGAAATCCCAGGATACAGGACGCCTTTCAGAACTTCCCAGGGCACCAAAATTGGCTAGTGGTCCAAAGGCGTCTGAGCTAAAAGCAAAGGTTGAAGCTGAGCAGCATGCACTCCGTAGGTTGAGAATGTGCCTCAGAGATGTTTGCAACCGGATATTGTATGACAAACGATTTAATGCCTTCCATTTTCCAGTCTCAGATGAAGACGCGCCTAATTATCGTGATATTATACAGAACCCAATGGACATTGCGACCATCTTGCAGCATGTTGATAACGGCAACTATATTACATGTGCTGCATTCCTGCAGGACGTTGATCTTATTGTTTCCAACGCAAAGGCTTACAATGGAGATGACTACAATGGTACTAGGATTGTCAGCAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCTCAAATGGATCCAGCACTGGCTGCATATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCATTTGCCTGACGAATTAGGGGATACTACATTCCCTGCTACTCCTGTTGTACAGATGGGCACCACTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGGGTTACGAAGTATTGAAGCGGACTAAGAAGATTGGTGATGGTGTACATGCAGACGACAAATTGCAAGATTCAATACCGACAAACTCCTCCCAGGAGCAGCATCAGGTGGTACAAGAAGAGGTGGATTCTGAAAGAATGGAGCCTGTAGCAATGGATGGAGATTTTGATGGATCTTGTCCAAATAACCTTGCTGATAGTAGCAGCCTTCATGATATCACGATGCTAGATGGTGAATTTTCAAGACAAGTTGAGTCTGTCAAGCAGCATTTCGTTAAGCGCACTGAAAAGTACAGCATCCCACAACTTGAAAGGCTTTACACGAGAATCATGAAGGGTGTGTTTGAAACCAAAGATAAAGGATTGAATGATGATGACCTCAAAACTTCGGTTTTGGGGTTTTTGTTGAAATATGTAGAGGATGATGCCAATTTCTGA 3621 0.4471 MYPKRSSLDDPDSRPVRTSDRIKTRPPAYNRAPFLYYNSNLRRPRKSKNKTRTAASQIAKMLRPGNRKARDLNTNSGSGNLRRSTRERRVNVNLMEFADSSGSEDADLMRPSYRPLRNRISNSVSRDGVVSSKRKRTVDTKSAPRREGLRPRRSKAAGRERLISESDDDQDLSEEKVEQDETENGNDVEENDAEDGHNEMEGDAEGEDEGEDEGEEEDGDDDEDGEEEQDGRRRYDLRNRADVRRFSMEEGKARPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLTRPEDSDDSLLVDELDQGPAIPWGRGGNRSGPPFLFGGVDTHGTTAWGLNLAASGWGHQGDAFATLTSGIQTAGPSSKGGADIQPLQIDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWQHPPLEELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVNSIRVEKCHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSTISDIFPPVSVASELSKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTMLEELPSDLPILLLGTSSAALADVEEVPTSVFPHRSVYQVNMPSTEDRTSFFDRLIEAAMSILLERISKKSQDTGRLSELPRAPKLASGPKASELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHFPVSDEDAPNYRDIIQNPMDIATILQHVDNGNYITCAAFLQDVDLIVSNAKAYNGDDYNGTRIVSRACELRDAVHGMLSQMDPALAAYCDKIASQGGPVHLPDELGDTTFPATPVVQMGTTTRMSARLRHVQPEVNMDQGYEVLKRTKKIGDGVHADDKLQDSIPTNSSQEQHQVVQEEVDSERMEPVAMDGDFDGSCPNNLADSSSLHDITMLDGEFSRQVESVKQHFVKRTEKYSIPQLERLYTRIMKGVFETKDKGLNDDDLKTSVLGFLLKYVEDDANF* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2193 1206 Gene3D - 891 1019 IPR036427 GO:0005515
Tpr3g2193 1206 Gene3D - 377 647 IPR027417 -
Tpr3g2193 1206 MobiDBLite consensus disorder prediction 167 227 - -
Tpr3g2193 1206 MobiDBLite consensus disorder prediction 100 294 - -
Tpr3g2193 1206 MobiDBLite consensus disorder prediction 129 166 - -
Tpr3g2193 1206 MobiDBLite consensus disorder prediction 63 87 - -
Tpr3g2193 1206 Pfam ATPase family associated with various cellular activities (AAA) 419 554 IPR003959 GO:0005524|GO:0016887
Tpr3g2193 1206 Gene3D - 555 640 - -
Tpr3g2193 1206 Pfam AAA+ lid domain 581 618 IPR041569 -
Tpr3g2193 1206 SUPERFAMILY Bromodomain 895 1010 IPR036427 GO:0005515
Tpr3g2193 1206 MobiDBLite consensus disorder prediction 1 21 - -
Tpr3g2193 1206 SMART bromo_6 899 1006 IPR001487 GO:0005515
Tpr3g2193 1206 CDD AAA 415 554 - -
Tpr3g2193 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 703 931 IPR027417 -
Tpr3g2193 1206 Pfam Bromodomain 913 980 IPR001487 GO:0005515
Tpr3g2193 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 642 IPR027417 -
Tpr3g2193 1206 PANTHER AAA DOMAIN-CONTAINING 1 1200 IPR045199 -
Tpr3g2193 1206 PANTHER BNAC08G44480D PROTEIN 1 1200 - -
Tpr3g2193 1206 SMART AAA_5 415 556 IPR003593 -
Tpr3g2193 1206 MobiDBLite consensus disorder prediction 1 30 - -
Tpr3g2193 1206 PRINTS Bromodomain signature 931 947 IPR001487 GO:0005515
Tpr3g2193 1206 PRINTS Bromodomain signature 947 965 IPR001487 GO:0005515
Tpr3g2193 1206 PRINTS Bromodomain signature 965 984 IPR001487 GO:0005515
Tpr3g2193 1206 MobiDBLite consensus disorder prediction 228 257 - -
Tpr3g2193 1206 CDD Bromo_AAA 899 1008 - -
Tpr3g2193 1206 ProSiteProfiles Bromodomain profile. 922 984 IPR001487 GO:0005515
Tpr3g2193 1206 Gene3D - 678 850 IPR027417 -
Tpr3g2193 1206 ProSitePatterns AAA-protein family signature. 524 542 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2193 Tpr-Chr3 20525769 20534386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2193 365 619 Calmodulin-binding Proteins AT3G56690 36.293 1.53e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2193 K22531 - gmx:100787765 1982.22