Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2187 ATGGACTCCGAGGATGATATGCATGATGCTAATGATATGGAGTCTCTTGATTATGATGATGATGATTTCTACAGTGGTGATACCGAAGGTGCTACCATAGATTATTACAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAACTTTACCATCTTGAAGGAATCCGATATCCGAATGAGACAGGAAGATGACATCAATACAGTAGCAGCTGTTCTTTCTGTATCGAAAGTTATTGCAAGCATACTACTTCGTCACTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCAAGTCCGAAAAGCGGTTGGCTTGTTGGATGAGCCAGTTGTCCAGCATCCTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCATTCTGGGATTGAAATGGCTTCTTGTGGTCATCCATACTGTTTCTCTTGCTGGGAAGGATATATTAGTACGTCCATTAATGACGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCAAGTTGTGGTGCTGCTATTGGTCAAGATATGATTGATTTATTAGCATCTAATGAAGATAAACAAAAATATGGCCGTTACCTTCTTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGCAAATTATGATGTCTCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGCGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATCACATGCACTCCACCCTGTAAATTTGAATTTTGTTGGCTATGCCTTGGTGCATGGTCAGACCATGGCGAAAGAACCGGCGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGGAGAGAAATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAACGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGATCAGATGCAAACTGTTCATATTGAGACGCTTAGTGACATTCAGTGCCAACCTGAGTCACAGCTTAAGTTCATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACATATGCATATGGGTACTATTTACCTGAGCATGAGCGTGGAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAACTACAGCAATTCCTCATTGCTGAAGAAGGCCCATCTAAAGAATTCAATGATTTCCGTACGAAGTTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCCGATGTGGATGGTAATGGAGCTGTCTTCAGCAAAGCTACGAGCTCAAAAAATGCAGCAGGGAGTAGCAAGGGGAGAGCTGCGAGAATGCGAATCAGCAGAACGGCTGATGATAGTCCCTGGTCCTGCGAGCATTGTACCTCTATGAATGCCAGATCTTTATCGACATGCCAGATTTGCAATCAACGTAGATGA 1752 0.4252 MDSEDDMHDANDMESLDYDDDDFYSGDTEGATIDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIRMRQEDDINTVAAVLSVSKVIASILLRHYNWSVSKVHDAWFADEEQVRKAVGLLDEPVVQHPNARELTCGICFENYPHSGIEMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPSCGAAIGQDMIDLLASNEDKQKYGRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGGANYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLDQMQTVHIETLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERGKKQFFEYLQGEAESGLERLHQCAEKELQQFLIAEEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDGNGAVFSKATSSKNAAGSSKGRAARMRISRTADDSPWSCEHCTSMNARSLSTCQICNQRR* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2187 583 SMART zf_4 558 582 IPR001876 -
Tpr3g2187 583 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Tpr3g2187 583 ProSitePatterns Zinc finger RanBP2-type signature. 560 579 IPR001876 -
Tpr3g2187 583 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Tpr3g2187 583 Pfam Ariadne domain 357 519 IPR045840 -
Tpr3g2187 583 SMART ibrneu5 208 270 IPR002867 -
Tpr3g2187 583 SMART ibrneu5 283 344 IPR002867 -
Tpr3g2187 583 MobiDBLite consensus disorder prediction 1 23 - -
Tpr3g2187 583 SUPERFAMILY RING/U-box 209 277 - -
Tpr3g2187 583 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Tpr3g2187 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Tpr3g2187 583 Gene3D - 266 522 - -
Tpr3g2187 583 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 537 IPR031127 GO:0004842|GO:0016567
Tpr3g2187 583 SUPERFAMILY RING/U-box 135 220 - -
Tpr3g2187 583 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 537 - -
Tpr3g2187 583 SUPERFAMILY RING/U-box 289 337 - -
Tpr3g2187 583 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Tpr3g2187 583 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2187 Tpr-Chr3 20450756 20458158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2187 20 583 ARIADNE family AT1G65430 69.649 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2187 K11968 - gmx:100784195 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4566 7 54154442 54161366 Tpr3g2187 3 20450756 20458158 PCT