Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2164 ATGTCAAAAACCACCGCATCCGGCGTCGACTCTCCCTGTAACGACCTCAAGACACCAACACTAGACACAGAGTCTCCCACACTACTCCACTCCATTTCAGAGCAAGGAGGATACGCCTACGTGAGAATGGCATCACTGGCTGCCGCCGGCGACATTCGAGCAGCAGAAGCAGTTAGAGAGATGGCGTGGGAGCAACTTCACTCTGGACCATGGCACTCGGTGTTACCGGTGTGGCGTGACGCTTATTCGATGGCTTGTCTTCATGTGGCGAAGCATCACTATGGAAACGGTGAGTTTAAGGAAGCGCTTAAGGCTTTGGATATGGGGATTATTATGGGAGGGAATCTTCTTAGAAAGGATTTGGATTCTGCTATTGGTAAGGTTTCTGAAAAAGCTAGGAGTATTAGGGTTTCTGATGGAAGCTACCAAGATTTTGGTAACTCTGAGCATCAACTTGTTGATCATGATTTTGATGTGTCTAAGGTGCTCCAACTTTTACCTGTTAAGTCCCTTGCATCTAAGCTTGTGGTGAAGAGGTCCGGCCTGTCGCTGGAGAAATTCCTGAAAGATCATTACCTGTCTGGCACCCCAGTTATCATCAGTGATTGTATGGCACACTGGCCAGCCAAGAAAAACTGGAATAACATAGATTACTTGCTCAGAGTTGCTGGTGACCGCACTGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCAGATTGGAAGCAAGAGCTAGTTACATTTTCGGAGTTTCTTGAGCGGATAAGGTCTCATAGCTGTTCTCCTGGTGGTCCGACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAGAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGAGAGCTAAGATTTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCACTACACCATGATCCACATCATAACATACTAGCACAGGTTGTTGGGAAAAAATACATTAGGCTTTATCCGGCATCTGTGTCTGAGGAACTTTTCCCCTACTCGGAAACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGATGTAGACGAAAGGAAGTTTCCTAAGGTGCAAGACCTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATACATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTAACTACCAGTTTGTCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCATCTCCGTCCTAA 1254 0.4545 MSKTTASGVDSPCNDLKTPTLDTESPTLLHSISEQGGYAYVRMASLAAAGDIRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYGNGEFKEALKALDMGIIMGGNLLRKDLDSAIGKVSEKARSIRVSDGSYQDFGNSEHQLVDHDFDVSKVLQLLPVKSLASKLVVKRSGLSLEKFLKDHYLSGTPVIISDCMAHWPAKKNWNNIDYLLRVAGDRTVPVEVGKNYLCADWKQELVTFSEFLERIRSHSCSPGGPTYLAQHPLFDQINELRRDIFIPDYCFAGGGELRFLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASVSEELFPYSETMLSNSSQVDLDDVDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSSPS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2164 417 Gene3D Cupin 175 409 - -
Tpr3g2164 417 SMART cupin_9 266 414 IPR003347 -
Tpr3g2164 417 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g2164 417 ProSiteProfiles JmjC domain profile. 275 417 IPR003347 -
Tpr3g2164 417 SUPERFAMILY Clavaminate synthase-like 180 409 - -
Tpr3g2164 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 36 411 - -
Tpr3g2164 417 Pfam Cupin-like domain 186 410 IPR041667 -
Tpr3g2164 417 PANTHER - 36 411 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2164 170 408 Acyl Lipid Metabolism Gene Families AT3G45880 25.676 3.71e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr3g2164 Cupin_8 7.1e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2164 K24444 - gmx:100813075 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2164 3 19974625 19979797 Tpr3g2164 3 19974625 19979797 ECH